BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0407700 Os09g0407700|J090085P19
         (251 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38740.1  | chr2:16194639-16195995 REVERSE LENGTH=245          231   2e-61
AT1G56500.1  | chr1:21159775-21167092 FORWARD LENGTH=1056          62   3e-10
AT4G21470.1  | chr4:11431284-11433197 FORWARD LENGTH=380           51   6e-07

>AT2G38740.1 | chr2:16194639-16195995 REVERSE LENGTH=245
          Length = 244

 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/178 (62%), Positives = 143/178 (80%), Gaps = 2/178 (1%)

Query: 12  SRP-LASSVPIEAVLFDIDGTLCDSDPLHHVAFQEMLLEIGYNNGVPIDEEFFINNIAGR 70
           S+P L+   P+EA+LFD+DGTLCDSDP+H +AFQE+L EIG+NNGVPIDE+FF+ NIAG+
Sbjct: 12  SKPSLSQLAPLEAILFDVDGTLCDSDPIHLIAFQELLQEIGFNNGVPIDEKFFVENIAGK 71

Query: 71  SDVEAAQNLFPDWPLEKGLKFLEDKEAKYRSLAKERLEPVKGLAKVVQWVKDHGYKRAAV 130
            + E A  LFPD  + +GLKF ++KEA YR +  E+++P+ GL K+ +W++D G KRAAV
Sbjct: 72  HNSEIALLLFPD-DVSRGLKFCDEKEALYRKIVAEKIKPLDGLIKLTKWIEDRGLKRAAV 130

Query: 131 TNAPRINSELMISLLGLTDFFQAVIVGGECEKPKPAPFPYLKALKELQVSADHTFIFE 188
           TNAP+ N+ELMIS LGLTDFFQAVI+G ECE PKP P PYLKAL+ L VS +HT +FE
Sbjct: 131 TNAPKENAELMISKLGLTDFFQAVILGSECEFPKPHPGPYLKALEVLNVSKEHTLVFE 188



>AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056
          Length = 1055

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 10/173 (5%)

Query: 21  IEAVLFDIDGTLCDSDPLHHVA----FQEMLLEIGYNNGVPIDEEFFINNIAGRSDVEAA 76
           + AVLFD+DG LC+S+ L   A    F EM +E+  ++ VP         + G + V+  
Sbjct: 74  VSAVLFDMDGVLCNSEDLSRRAAVDVFTEMGVEVTVDDFVPFMGTGEAKFLGGVASVKEV 133

Query: 77  QNLFPDWPLEKGLKFLEDKEAKYRSLAKERLEPVKGLAKVVQWVKDHGYKRAAVTNAPRI 136
           +   PD   E+  +   DK AK  S          G  ++V   K+ G K A  ++A RI
Sbjct: 134 KGFDPDAAKERFFEIYLDKYAKPESGIG-----FPGALELVTECKNKGLKVAVASSADRI 188

Query: 137 NSELMISLLGLT-DFFQAVIVGGECEKPKPAPFPYLKALKELQVSADHTFIFE 188
             +  +   GL+   F A++     E  KPAP  +L A K L V      + E
Sbjct: 189 KVDANLKAAGLSLTMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVIE 241



>AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380
          Length = 379

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 8/167 (4%)

Query: 24  VLFDIDGTLCDSDPLHHVAFQEMLLEIGYN-NGVPIDEEFFINNIAGRSDVEAAQNLFPD 82
           VL D+DGTL ++D +     ++ L + G   +G    E      I G++ VEAA  +  D
Sbjct: 14  VLIDLDGTLINTDGVVGDILRKYLCKYGKQWDG---RESL---KIVGKTPVEAATTIVED 67

Query: 83  WPLEKGLKFLEDKEAKYRSLAKERLEPVKGLAKVVQWVKDHGYKRAAVTNAPRINSELMI 142
           + L   +     +     S   ++++ + G  ++++ +K HG   A  +N+ R N E  I
Sbjct: 68  YELPCKVDEFNSEFYPLFSAQMDKIKSLPGANRLIRHLKCHGVPVALASNSSRANIESKI 127

Query: 143 SLL-GLTDFFQAVIVGGECEKPKPAPFPYLKALKELQVSADHTFIFE 188
           S   G  + F  ++   E  K KP+P  +L+A K L+       + E
Sbjct: 128 SYHEGWKECFSVIVGSDEVSKGKPSPDIFLEAAKRLKKDPADCLVIE 174



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,439,822
Number of extensions: 220679
Number of successful extensions: 648
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 3
Length of query: 251
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 155
Effective length of database: 8,474,633
Effective search space: 1313568115
Effective search space used: 1313568115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 110 (47.0 bits)