BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0401300 Os09g0401300|AK065170
         (416 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17860.1  | chr3:6119968-6122691 FORWARD LENGTH=353             83   3e-16
AT1G48500.1  | chr1:17931658-17934433 FORWARD LENGTH=311           69   6e-12
AT1G70700.1  | chr1:26654951-26656804 FORWARD LENGTH=268           49   4e-06
AT1G19180.1  | chr1:6622312-6623271 FORWARD LENGTH=254             49   7e-06

>AT3G17860.1 | chr3:6119968-6122691 FORWARD LENGTH=353
          Length = 352

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 94/195 (48%), Gaps = 28/195 (14%)

Query: 175 GSTVGVYGTRD--MPKAKAAQLTIFYAGSVNVFNNVSPEKAQELMFLASRGSLPSAPTTV 232
           GS VG    R    P    AQLTIFYAGSV V++++SPEKA+ +M LA  GS        
Sbjct: 158 GSIVGTTDIRSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIMLLAGNGS-------- 209

Query: 233 ARMPEAHVFPPAKVTVPEVSPTKPMMLQKPQLVSSPVPAISKP-ISVVSQATSLPRSASS 291
             MP+  VF P +     V  T+        + SS +P    P IS +S     P + SS
Sbjct: 210 -SMPQ--VFSPPQTHQQVVHHTRA------SVDSSAMPPSFMPTISYLS-----PEAGSS 255

Query: 292 SNVDSNVTKSSGXXXXXXXXXXXXXXXET---LATTTAAAIMPRAVPQARKASLARFLEK 348
           +N       + G                    ++ +T       A+P ARKASLARFLEK
Sbjct: 256 TNGLGATKATRGLTSTYHNNQANGSNINCPVPVSCSTNVMAPTVALPLARKASLARFLEK 315

Query: 349 RKERVTTVAPYPLAK 363
           RKERVT+V+PY L K
Sbjct: 316 RKERVTSVSPYCLDK 330



>AT1G48500.1 | chr1:17931658-17934433 FORWARD LENGTH=311
          Length = 310

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 83/178 (46%), Gaps = 52/178 (29%)

Query: 193 QLTIFYAGSVNVFNNVSPEKAQELMFLASRGSLPSAPTTVARMPEAHVFPPAKVTVPEVS 252
           QLTIFYAGSV V+ +++PEKAQ +M LA  G                  P AK     VS
Sbjct: 147 QLTIFYAGSVLVYQDIAPEKAQAIMLLAGNG------------------PHAK----PVS 184

Query: 253 PTKPMMLQKPQL--------VSSPVPAISKPISVVSQATSLPRSASSSNVDS---NVTKS 301
             KP  L    L          S +P+IS    +VS+     RS+ S+ V       TK+
Sbjct: 185 QPKPQKLVHHSLPTTDPPTMPPSFLPSISY---IVSET----RSSGSNGVTGLGPTKTKA 237

Query: 302 SGXXXXXXXXXXXXXXXETLATTTAAAIMPRAVPQARKASLARFLEKRKERVTTVAPY 359
           S                +T A + A  +    +PQ RKASLARFLEKRKERV  V+PY
Sbjct: 238 S---------LASTRNNQTAAFSMAPTV---GLPQTRKASLARFLEKRKERVINVSPY 283



>AT1G70700.1 | chr1:26654951-26656804 FORWARD LENGTH=268
          Length = 267

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 159 GGAFKQP-PFAMGNAVAGSTVGVYGTRDMPKAKAAQLTIFYAGSVNVFNNVSPEKAQELM 217
           GGAF+   P  +G +V   T      R      + QLTIFY G+++VFN++SP+KAQ +M
Sbjct: 84  GGAFQNATPLLLGGSVPLPTHPSLVPRVASSGSSPQLTIFYGGTISVFNDISPDKAQAIM 143

Query: 218 FLASRG 223
             A  G
Sbjct: 144 LCAGNG 149



>AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254
          Length = 253

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 31/38 (81%)

Query: 187 PKAKAAQLTIFYAGSVNVFNNVSPEKAQELMFLASRGS 224
           P+++ A LTIFYAG V VFN+ S EKA+E++ LAS+G+
Sbjct: 120 PESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGT 157



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,629,666
Number of extensions: 301547
Number of successful extensions: 1014
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1015
Number of HSP's successfully gapped: 4
Length of query: 416
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,337,553
Effective search space: 2626329195
Effective search space used: 2626329195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)