BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0394500 Os09g0394500|J065054A13
         (94 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05030.1  | chr1:1438324-1441385 REVERSE LENGTH=525             60   2e-10
AT5G16150.1  | chr5:5272904-5275678 FORWARD LENGTH=547             51   1e-07

>AT1G05030.1 | chr1:1438324-1441385 REVERSE LENGTH=525
          Length = 524

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 27  VRQICNFLVGLYFLELAKKLXXXXXXXXXXXXSLLSALFAYNFIVETKGRSLEEIEMSLS 86
           V  + NFLVGL+FL+L +K             SLL+A F++ F VETKGRSLEEIE+SL+
Sbjct: 459 VHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSLN 518



>AT5G16150.1 | chr5:5272904-5275678 FORWARD LENGTH=547
          Length = 546

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 23  MDWVVRQICNFLVGLYFLELAKKLXXXXXXXXXXXXSLLSALFAYNFIVETKGRSLEEIE 82
           M W    I NF++GLYFL +  K              +L+ L+    +VETKGRSLEEIE
Sbjct: 484 MHW----ISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIE 539

Query: 83  MSLSPAA 89
           ++L+  A
Sbjct: 540 LALTSGA 546



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,512,082
Number of extensions: 35466
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 4
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)