BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0382500 Os09g0382500|AK105199
         (90 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47833.1  | chr3:17648721-17649829 FORWARD LENGTH=94            78   9e-16
AT5G62575.2  | chr5:25117542-25118565 FORWARD LENGTH=101           77   1e-15

>AT3G47833.1 | chr3:17648721-17649829 FORWARD LENGTH=94
          Length = 93

 Score = 78.2 bits (191), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 45/56 (80%)

Query: 31 RRGFHVELGAREKALLEEDTALKRFKSYKNSVKQVSKVGNILTGVVLFACAYEIVA 86
          RRGFHVELGAREKALL ED +L+RFKS+K  V ++ ++G++LT VV+  C YEI A
Sbjct: 28 RRGFHVELGAREKALLAEDASLRRFKSHKKGVHRLKRIGDVLTVVVVAGCCYEIYA 83



>AT5G62575.2 | chr5:25117542-25118565 FORWARD LENGTH=101
          Length = 100

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 44/54 (81%)

Query: 31 RRGFHVELGAREKALLEEDTALKRFKSYKNSVKQVSKVGNILTGVVLFACAYEI 84
          RRGFH+E G REKALL ED+ALKRFKS+K SV ++ ++G++LT VV+  C YEI
Sbjct: 30 RRGFHIEPGTREKALLAEDSALKRFKSHKKSVHKLKRIGDVLTVVVVAGCCYEI 83



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,253,596
Number of extensions: 32065
Number of successful extensions: 92
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 90
Length of database: 11,106,569
Length adjustment: 61
Effective length of query: 29
Effective length of database: 9,434,193
Effective search space: 273591597
Effective search space used: 273591597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)