BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0371300 Os09g0371300|Os09g0371300
(507 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10190.1 | chr5:3199205-3201140 FORWARD LENGTH=489 214 6e-56
AT1G78130.1 | chr1:29400171-29401814 FORWARD LENGTH=491 205 5e-53
AT4G36790.1 | chr4:17336360-17338304 FORWARD LENGTH=490 142 4e-34
AT2G18590.1 | chr2:8069988-8072866 FORWARD LENGTH=474 102 5e-22
>AT5G10190.1 | chr5:3199205-3201140 FORWARD LENGTH=489
Length = 488
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 105/181 (58%), Positives = 123/181 (67%), Gaps = 2/181 (1%)
Query: 246 SLGGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLF 305
SLGGL GG MGD LA+++P+ GRI LSQ+S+GS DDPST +H LVL
Sbjct: 271 SLGGLFGGYMGDTLAKKFPNGGRIFLSQVSSGSAIPLAAILLIGLPDDPSTAFSHGLVLV 330
Query: 306 VMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFK 365
+MGL ISWN AATN PIFAEIVPE++RTSIYALDRSFESILASFAPP VG L+Q++YG+K
Sbjct: 331 IMGLCISWNGAATNGPIFAEIVPERARTSIYALDRSFESILASFAPPIVGMLAQNIYGYK 390
Query: 366 PX-XXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRARAMQS 424
P ++ DR N PM C IYSFLYCTYPRDRDRA+ MQ+
Sbjct: 391 PIPEGSTSSVKIDTDRANAASLAKALYTSIGIPMVICCTIYSFLYCTYPRDRDRAK-MQA 449
Query: 425 L 425
L
Sbjct: 450 L 450
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/188 (57%), Positives = 121/188 (64%)
Query: 16 ERRTLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXXX 75
E TLVLV LA IMERADE+LLP VY+EVG ALH PT LG LTL RS
Sbjct: 4 ETLTLVLVYLAGIMERADESLLPGVYKEVGDALHVDPTALGTLTLFRSIVQSSCYPLAAY 63
Query: 76 XXSRHNRXXXXXXXXXXXXXXTFLVAVSGTFLQVAISRGLNGIGLALVIPAVQSLVADST 135
SRHNR TFLVAVS TF QVA+SRGLNGIGLA+V PA+QSLVADST
Sbjct: 64 LSSRHNRAHVIALGAFLWATATFLVAVSTTFFQVAVSRGLNGIGLAIVTPAIQSLVADST 123
Query: 136 DDGNRGAAFGWLQLTXXXXXXXXXFSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLVW 195
DD NRG AFGWL T ++L AS + GV GWR+AF LVA +SV VG+LV
Sbjct: 124 DDYNRGMAFGWLGFTSNIGSILGYVCSILFASKSFNGVAGWRIAFLLVAVVSVIVGILVR 183
Query: 196 LFAVDPHF 203
LFA DPH+
Sbjct: 184 LFATDPHY 191
>AT1G78130.1 | chr1:29400171-29401814 FORWARD LENGTH=491
Length = 490
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 246 SLGGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLF 305
SLGGL GGKMGD L+ R P++GRI+L+QIS+ S DDPST H L+L
Sbjct: 274 SLGGLFGGKMGDFLSTRLPNSGRIILAQISSASAIPLAAILLLVLPDDPSTAAIHGLILV 333
Query: 306 VMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFK 365
++GL +SWNA ATNNPIFAEIVPEKSRTS+YALD+SFESIL+SFAPP VG L+QHVYG+K
Sbjct: 334 LLGLFVSWNAPATNNPIFAEIVPEKSRTSVYALDKSFESILSSFAPPIVGILAQHVYGYK 393
Query: 366 PXXX-XXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRAR 420
P + DREN PM AC IYSFLY +YP DRDRAR
Sbjct: 394 PIPEGSSRSTEIATDRENAASLAKALYTSIGLPMAACCFIYSFLYRSYPLDRDRAR 449
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/188 (59%), Positives = 124/188 (65%)
Query: 16 ERRTLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXXX 75
E TL+LVNLA IMERADE+LLP VY+EVG ALH PTGLG+LTL RS
Sbjct: 4 ETMTLLLVNLAGIMERADESLLPGVYKEVGLALHTDPTGLGSLTLLRSMVQAACYPLAAY 63
Query: 76 XXSRHNRXXXXXXXXXXXXXXTFLVAVSGTFLQVAISRGLNGIGLALVIPAVQSLVADST 135
RHNR TFLVA S TF QVA+SR LNGIGLALV PA+QSLVADST
Sbjct: 64 MAIRHNRAHVIALGAFLWSAATFLVAFSSTFFQVAVSRALNGIGLALVAPAIQSLVADST 123
Query: 136 DDGNRGAAFGWLQLTXXXXXXXXXFSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLVW 195
DD NRG AFGWLQLT ++L+A T +G+ GWRVAFH+V ISV VGVLV
Sbjct: 124 DDANRGTAFGWLQLTANIGSILGGLCSVLIAPLTFMGIPGWRVAFHIVGVISVIVGVLVR 183
Query: 196 LFAVDPHF 203
+FA DPHF
Sbjct: 184 VFANDPHF 191
>AT4G36790.1 | chr4:17336360-17338304 FORWARD LENGTH=490
Length = 489
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 105/183 (57%)
Query: 19 TLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXXXXXS 78
+L+L+NLA+IMERADE LLP+VY+EV A +A P+ LG LT R+
Sbjct: 44 SLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFVRNFVQGLASPLAGVLVI 103
Query: 79 RHNRXXXXXXXXXXXXXXTFLVAVSGTFLQVAISRGLNGIGLALVIPAVQSLVADSTDDG 138
++R T V S F+QVA+ R +NG GLA+VIPA+QS +ADS DG
Sbjct: 104 TYDRPIVLAIGTFCWALSTAAVGASSYFIQVALWRAVNGFGLAIVIPALQSFIADSYKDG 163
Query: 139 NRGAAFGWLQLTXXXXXXXXXFSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLVWLFA 198
RGA FG L L A ++A + G+ GWR AF ++AA+S +G+LV+LF
Sbjct: 164 ARGAGFGMLNLIGTIGGIGGGVVATVMAGSEFWGIPGWRCAFIMMAALSAVIGLLVFLFV 223
Query: 199 VDP 201
VDP
Sbjct: 224 VDP 226
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 246 SLGGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLF 305
++G L+GG + D ++R YP++GR++ +Q SA S+ + LF
Sbjct: 308 AIGTLMGGIIADKMSRIYPNSGRVMCAQFSAFMGIPFSIILLKVIPQSTSSYSIFSITLF 367
Query: 306 VMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFK 365
+MGL I+W +A N P+FAE+VP + RT IYA DR+FE +SFA P VG LS+ ++G+
Sbjct: 368 LMGLTITWCGSAVNAPMFAEVVPPRHRTMIYAFDRAFEGSFSSFAAPLVGILSEKLFGYD 427
Query: 366 PXXXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRARAMQS 424
R+ + P C Y+ L+ + +DR+ A+ S
Sbjct: 428 SRGIDPLKGSSVREAD---ALSKGLLSMMAVPFGLCCLCYTPLHFVFQKDRENAKIASS 483
>AT2G18590.1 | chr2:8069988-8072866 FORWARD LENGTH=474
Length = 473
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%)
Query: 24 NLASIMERADEALLPAVYREVGAALHATPTGLGALTLCRSXXXXXXXXXXXXXXSRHNRX 83
NLA++M+RADE L+P+ +E+ A HA + +G L+ R+ ++R
Sbjct: 19 NLATMMQRADEKLIPSTAKELKEAFHAKLSDIGLLSFIRNIVQGLASPLAGLFAISYDRP 78
Query: 84 XXXXXXXXXXXXXTFLVAVSGTFLQVAISRGLNGIGLALVIPAVQSLVADSTDDGNRGAA 143
T VS F+QV + NG+G A+V P +QS++ADS + +RG
Sbjct: 79 TVFAFGSFFWVSSTVATGVSRYFIQVTLGVAFNGVGHAIVYPVLQSIIADSFKESSRGFG 138
Query: 144 FGWLQLTXXXXXXXXXFSALLLASTTVLGVEGWRVAFHLVAAISVAVGVLVWLFAVDP 201
FG L ++A G+ GWR AF L A +S VG+LV+ F DP
Sbjct: 139 FGLWNLIGTVGGIGGTVVPTVMAGHDFFGISGWRCAFILSATLSTIVGILVFFFVSDP 196
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 4/179 (2%)
Query: 246 SLGGLLGGKMGDALARRYPDAGRIVLSQISAGSXXXXXXXXXXXXXDDPSTGVAHCLVLF 305
++G L+GG + D ++R +P++GR++ +Q S ++ + LF
Sbjct: 293 AIGSLVGGIIADKMSRVFPNSGRLICAQFSVFMGAMFSIVLLRMIPQSVNSFYIFLVTLF 352
Query: 306 VMGLIISWNAAATNNPIFAEIVPEKSRTSIYALDRSFESILASFAPPAVGYLSQHVYGFK 365
+MGL I+W A N+PI AEIVP K RT +YA DR+ E +SF P VG +S+ ++GF
Sbjct: 353 LMGLTITWCGPAINSPILAEIVPAKHRTMVYAFDRALEVTFSSFGAPLVGIMSEKLFGFD 412
Query: 366 PXXXXXXXXXVERDRENXXXXXXXXXXXXXXPMTACSAIYSFLYCTYPRDRDRARAMQS 424
V P C Y+ L+ + +DR R S
Sbjct: 413 ----AKGIDHVNDSGREAEALGKGIMWMMALPFGLCCLCYTPLHFLFRKDRKIDRTTSS 467
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,579,479
Number of extensions: 176338
Number of successful extensions: 329
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 8
Length of query: 507
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 404
Effective length of database: 8,282,721
Effective search space: 3346219284
Effective search space used: 3346219284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)