BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0363700 Os09g0363700|AK103667
(130 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57000.1 | chr5:23063870-23065203 REVERSE LENGTH=188 94 2e-20
AT1G72690.1 | chr1:27361223-27361745 FORWARD LENGTH=88 77 3e-15
AT1G17490.1 | chr1:6008669-6009165 FORWARD LENGTH=78 58 2e-09
>AT5G57000.1 | chr5:23063870-23065203 REVERSE LENGTH=188
Length = 187
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 75/116 (64%), Gaps = 15/116 (12%)
Query: 26 KVKAPNLFERAKEEVEALVGAVH------DKMEHNS-SPHGNN--ADLHKDSKDESKVSM 76
KVKAPN+FERAKEE++A++GA+H DKME S P ++ K ++++ K
Sbjct: 27 KVKAPNMFERAKEELDAVIGAIHQRKSSKDKMEFKSDKPEDGKKKPNMLKKAREDLKSLF 86
Query: 77 NK------IETHKNETHGTSDDINENTPVERVKGPNVFERAKEEIEAIVEAFHPKK 126
K + H ETHG SDDI+ENTPV+ VK PNV ERAKEEIEA+++ H KK
Sbjct: 87 LKEKPPRHLHHHHKETHGRSDDISENTPVDEVKAPNVLERAKEEIEAVIDTIHSKK 142
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 33/42 (78%)
Query: 9 KETHRTSNDISHKTSVDKVKAPNLFERAKEEVEALVGAVHDK 50
KETH S+DIS T VD+VKAPN+ ERAKEE+EA++ +H K
Sbjct: 100 KETHGRSDDISENTPVDEVKAPNVLERAKEEIEAVIDTIHSK 141
>AT1G72690.1 | chr1:27361223-27361745 FORWARD LENGTH=88
Length = 87
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 58/104 (55%), Gaps = 28/104 (26%)
Query: 27 VKAPNLFERAKEEVEALVGAVHDKMEHNSSPHGNNADLHKDSKDESKVSMNKIETHKNET 86
VK+PN+FER KEE+EA+ H+K +K H ET
Sbjct: 12 VKSPNVFERVKEEIEAM--GHHEK--------------------------SKSRHHDKET 43
Query: 87 HGTSDDINENTPVERVKGPNVFERAKEEIEAIVEAFHPKKGSDK 130
HGTSDDI+E+TP++ VKGP F+R KEEIEAI A PK+ S K
Sbjct: 44 HGTSDDIDESTPIDYVKGPGFFQRLKEEIEAIFNAVTPKRSSKK 87
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 2 NKDKVHDKETHRTSNDISHKTSVDKVKAPNLFERAKEEVEALVGAV 47
+K + HDKETH TS+DI T +D VK P F+R KEE+EA+ AV
Sbjct: 34 SKSRHHDKETHGTSDDIDESTPIDYVKGPGFFQRLKEEIEAIFNAV 79
>AT1G17490.1 | chr1:6008669-6009165 FORWARD LENGTH=78
Length = 77
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 68 SKDESKVSMNKIETHKNETHGTSDDINENTPVERVKGPNVFERAKEEIEAIVEAFHPKKG 127
S+ E K SM H ETHG S+DI+E T V+ VKGP V R EE+EAIV+A P K
Sbjct: 19 SRKEEKESM----FHGKETHGRSEDIDEKTRVDDVKGPGVLGRMMEEMEAIVDAVTPNKS 74
Query: 128 SDK 130
SDK
Sbjct: 75 SDK 77
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 26/41 (63%)
Query: 7 HDKETHRTSNDISHKTSVDKVKAPNLFERAKEEVEALVGAV 47
H KETH S DI KT VD VK P + R EE+EA+V AV
Sbjct: 29 HGKETHGRSEDIDEKTRVDDVKGPGVLGRMMEEMEAIVDAV 69
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.304 0.122 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,109,863
Number of extensions: 129388
Number of successful extensions: 480
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 6
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 106 (45.4 bits)