BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0360400 Os09g0360400|AK071395
         (196 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09830.1  | chr4:6188866-6190591 FORWARD LENGTH=192            128   2e-30
AT5G64780.1  | chr5:25900700-25901955 REVERSE LENGTH=176          116   7e-27

>AT4G09830.1 | chr4:6188866-6190591 FORWARD LENGTH=192
          Length = 191

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 97/157 (61%), Gaps = 6/157 (3%)

Query: 18  DRALYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVADI 77
           DR +Y +FR AANSLSQLYT +M  QKLSFQAGERH +EKLY+WI RQ E G R+T  DI
Sbjct: 16  DRTVYASFRTAANSLSQLYTQSMNHQKLSFQAGERHGLEKLYQWIWRQQEGGSRVTPMDI 75

Query: 78  ASHIQHEIQYGGDNASASPRSQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLV--QSK 135
            ++IQ+E++   D    SPR+     +   T P   T S    P    +  +     Q+K
Sbjct: 76  VNYIQNELECCIDEPPISPRAPPPQPTMHVTNPGLMTTSGTSFPTAVPVVRSEQCENQAK 135

Query: 136 NSAVFSNALSSPVRRSLQPFHLEQGGDAGYFANGVNR 172
           NS VFSNALSSP+RRSLQ + + QG   GY + G  R
Sbjct: 136 NS-VFSNALSSPIRRSLQNYQIPQG---GYTSGGTTR 168



>AT5G64780.1 | chr5:25900700-25901955 REVERSE LENGTH=176
          Length = 175

 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 93/156 (59%), Gaps = 3/156 (1%)

Query: 17  TDRALYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVAD 76
            DR +YGAFRGAANSLSQLYT AM  Q++SF AGER  MEKLY+WI+RQ E G R++ AD
Sbjct: 15  VDRTMYGAFRGAANSLSQLYTHAMNHQRVSFLAGERRGMEKLYQWIVRQEEQGTRVSTAD 74

Query: 77  IASHIQHEIQYGGDNASASPRSQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLVQSKN 136
           I +++Q+ ++Y  +  S     Q   Q   A   +  +++  PS ++    +    Q K 
Sbjct: 75  ITTYLQNALEYEPEETSIPLPMQEFYQHQFAPPNVNTSVAHVPSSHIAQQQHYDCNQEK- 133

Query: 137 SAVFSNALSSPVRRSLQPFHL--EQGGDAGYFANGV 170
             +  N LSSPVRR+LQ F+L   + G+  Y  N  
Sbjct: 134 LLIPPNGLSSPVRRTLQDFNLCEAESGNNNYNPNST 169



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,420,948
Number of extensions: 134526
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 2
Length of query: 196
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 103
Effective length of database: 8,556,881
Effective search space: 881358743
Effective search space used: 881358743
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)