BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0357500 Os09g0357500|Os09g0357500
(140 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43470.1 | chr5:17463130-17466658 REVERSE LENGTH=909 48 1e-06
AT5G48620.1 | chr5:19717406-19720932 FORWARD LENGTH=909 48 2e-06
AT1G50180.1 | chr1:18584235-18587136 FORWARD LENGTH=858 47 3e-06
AT3G46530.1 | chr3:17130739-17133246 REVERSE LENGTH=836 47 4e-06
AT3G46710.1 | chr3:17206489-17209032 REVERSE LENGTH=848 46 5e-06
AT5G35450.1 | chr5:13667809-13670685 FORWARD LENGTH=902 46 7e-06
>AT5G43470.1 | chr5:17463130-17466658 REVERSE LENGTH=909
Length = 908
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 12 LLKLGELAMDEYKLQKGVKRNVEALRRELESMQAALRKVGDVPSDQLDEQVELWARDVRE 71
L KL +L E + +G+ ++ L+R+L S+Q+ L+ ++V + DV++
Sbjct: 10 LEKLWDLLSRESERLQGIDGQLDGLKRQLRSLQSLLKDAD--AKKHGSDRVRNFLEDVKD 67
Query: 72 LSYDADDVLDTFMVRVRVDDDNHGSKGMVSKVAAGFLGKAAKMRHDIADEIKGIMERARE 131
L +DA+D+++++++ ++ G K V ++A FL RH +A +I+GI +R E
Sbjct: 68 LVFDAEDIIESYVLN-KLSGKGKGVKKHVRRLAC-FLTD----RHKVASDIEGITKRISE 121
Query: 132 V 132
V
Sbjct: 122 V 122
>AT5G48620.1 | chr5:19717406-19720932 FORWARD LENGTH=909
Length = 908
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 4 ATGAMGNLLLKLGELAMDEYKLQKGVKRNVEALRRELESMQAALRKVGDVPSDQLDEQVE 63
A G + L KL +L E + +G+ ++ L+R+L S+Q+ L+ ++V
Sbjct: 2 AEGFVSFGLEKLWDLLSRESERLQGIDEQLDGLKRQLRSLQSLLKDAD--AKKHGSDRVR 59
Query: 64 LWARDVRELSYDADDVLDTFMVRVRVDDDNHGSKGMVSKVAAGFLGKAAKMRHDIADEIK 123
+ DV++L +DA+D+++++++ ++ + G K V ++A FL RH +A +I+
Sbjct: 60 NFLEDVKDLVFDAEDIIESYVLN-KLRGEGKGVKKHVRRLAR-FLTD----RHKVASDIE 113
Query: 124 GIMERAREV 132
GI +R +V
Sbjct: 114 GITKRISDV 122
>AT1G50180.1 | chr1:18584235-18587136 FORWARD LENGTH=858
Length = 857
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 14 KLGELAMDEYKLQKGVKRNVEALRRELESMQAALRKVGDVPSDQLDEQVELWARDVRELS 73
KLG+L ++E G+ V+ L+ EL+ + L+ + + E+V W +RE S
Sbjct: 12 KLGQLLLEEPLFLFGIGDQVKQLQDELKRLNCFLKDADEKQHES--ERVRNWVAGIREAS 69
Query: 74 YDADDVLDTFMVRVRVDDDNHGSKGM--VSKVAAGFLGKAAKMRHDIADEIKGIMERARE 131
YDA+D+L+ F ++ ++ KGM V + A L +A + H + EI+ I R +
Sbjct: 70 YDAEDILEAFFLKA----ESRKQKGMKRVLRRLACILNEAVSL-HSVGSEIREITSRLSK 124
Query: 132 VTA 134
+ A
Sbjct: 125 IAA 127
>AT3G46530.1 | chr3:17130739-17133246 REVERSE LENGTH=836
Length = 835
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 14 KLGELAMDEYKLQKGVKRNVEALRRELESMQAALRKVGDVPSDQLDEQVELWARDVRELS 73
K+G ++E + VK ++E L+ EL + L+ V ++ DE + W++ V + +
Sbjct: 12 KIGNYLIEEASMFMAVKEDLEELKTELTCIHGYLKDVE--AREREDEVSKEWSKLVLDFA 69
Query: 74 YDADDVLDTFMVRVRVDDDNHGSKGMVSKVAAGFLGKAAKM-RHDIADEIKGIMERAREV 132
YD +DVLDT+ +++ G + + +K+ KM + I D+I+ + R ++
Sbjct: 70 YDVEDVLDTYHLKLEERSQRRGLRRLTNKI-------GRKMDAYSIVDDIRILKRRILDI 122
Query: 133 TARRDRY 139
T +R+ Y
Sbjct: 123 TRKRETY 129
>AT3G46710.1 | chr3:17206489-17209032 REVERSE LENGTH=848
Length = 847
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 14 KLGELAMDEYKLQKGVKRNVEALRRELESMQAALRKVGDVPSDQLDEQVELWARDVRELS 73
K+ ++E + GVK ++E L+ EL +Q L+ V D+ DE + W + V +++
Sbjct: 12 KIDNYLIEEAPMLIGVKDDLEELKTELTCIQVYLKNVE--VCDKEDEVSKEWTKLVLDIA 69
Query: 74 YDADDVLDTFMVRVRVDDDNHGSKGMVSKVAAGFLGKAAKMRHDIADEIKGIMERAREVT 133
YD +DVLDT+ +++ G + + ++ K ++I D+IK + R +VT
Sbjct: 70 YDVEDVLDTYFLKLEKRLHRLGLMRLTNIIS------DKKDAYNILDDIKTLKRRTLDVT 123
Query: 134 ARRDRY 139
+ + Y
Sbjct: 124 RKLEMY 129
>AT5G35450.1 | chr5:13667809-13670685 FORWARD LENGTH=902
Length = 901
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 4 ATGAMGNLLLKLGELAMDEYKLQKGVKRNVEALRRELESMQAALRKVGDVPSDQLDEQVE 63
A G + + KL L E + G+ V+ L+R+L +Q+ L+ ++V
Sbjct: 2 AEGVVSFGVQKLWALLNRESERLNGIDEQVDGLKRQLRGLQSLLKDAD--AKKHGSDRVR 59
Query: 64 LWARDVRELSYDADDVLDTFMVRVRVDDDNHGSKGMVSKVAAGFLGKAAKMRHDIADEIK 123
+ DV++L +DA+D+++++++ ++ + G K V ++A FL RH +A +I+
Sbjct: 60 NFLEDVKDLVFDAEDIIESYVLN-KLRGEGKGVKNHVRRLAC-FLTD----RHKVASDIE 113
Query: 124 GIMERAREV 132
GI +R +V
Sbjct: 114 GITKRISKV 122
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,662,850
Number of extensions: 99648
Number of successful extensions: 464
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 8
Length of query: 140
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 52
Effective length of database: 8,693,961
Effective search space: 452085972
Effective search space used: 452085972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)