BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0327000 Os09g0327000|Os09g0327000
(415 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46060.1 | chr5:18681533-18682459 FORWARD LENGTH=249 190 1e-48
AT3G18215.1 | chr3:6240968-6242358 FORWARD LENGTH=245 142 2e-34
AT5G24600.1 | chr5:8421790-8423342 REVERSE LENGTH=249 141 8e-34
AT5G10580.1 | chr5:3347511-3348657 FORWARD LENGTH=247 80 1e-15
AT4G31330.1 | chr4:15202354-15203151 FORWARD LENGTH=240 80 3e-15
AT5G24790.1 | chr5:8512076-8513064 FORWARD LENGTH=247 62 6e-10
AT5G43180.1 | chr5:17336425-17337816 REVERSE LENGTH=240 56 3e-08
>AT5G46060.1 | chr5:18681533-18682459 FORWARD LENGTH=249
Length = 248
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 149/227 (65%), Gaps = 5/227 (2%)
Query: 153 KSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESA 212
K +DLVLVP GL I++ YHL LL+RIL P+ T+IG+ N +K WV+R++QA E
Sbjct: 7 KEYLDLVLVPFGLIIVLSYHLFLLYRILYFPYHTIIGFMNIDKSIWVDRIMQARKDELGG 66
Query: 213 LALGVISDNISAATTLASLCIALGSLIGAWVSSSPAPGAAGVVVLGYGDGSHATATVKCV 272
AL V+S +ISA+T +AS+ + L SLIGAW+ SSP YGD S T +K
Sbjct: 67 -ALTVLSSSISASTFMASIALTLSSLIGAWIGSSPVSMTVFTGHFIYGDTSSITMVIKYT 125
Query: 273 ALLACFLASFTCFIQSARYFVHASFLMSALAGDAAPPVGDAQRAVVRGGNFWAAGLRALY 332
+LL CFL +F CFIQS R F+HA++L++ D P + +R V+RGGN+W+ GLRALY
Sbjct: 126 SLLICFLVAFCCFIQSTRCFLHANYLITTPGEDIPPDM--VKRFVLRGGNYWSLGLRALY 183
Query: 333 LATALLMWVFGPVPMLACSVLTVAALHRLDANSM--PLHHHRFTARS 377
LA LL+W+FGPVPM SVL V L+ LD+NS+ PL+H F A
Sbjct: 184 LALDLLLWLFGPVPMFINSVLMVICLYFLDSNSVAQPLYHRTFEAEQ 230
>AT3G18215.1 | chr3:6240968-6242358 FORWARD LENGTH=245
Length = 244
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 124/228 (54%), Gaps = 4/228 (1%)
Query: 153 KSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESA 212
+ S+DLVLVP GL +MV YH+ L++ IL P TVI ++ WV M+ +
Sbjct: 4 EESLDLVLVPTGLVVMVAYHVWLVYAILHRPKLTVIALNAESRRQWVFSMMTEPL-KNGT 62
Query: 213 LALGVISDNISAATTLASLCIALGSLIGAWVSSSPAPGAAGVVVLGYGDGSHATATVKCV 272
LA+ I +NI A+T LA+ I L S+IG +VS+S + + ++ YG S A+ K
Sbjct: 63 LAVQTIRNNIMASTLLATTAITLCSIIGVFVSNSSSSKSTATNLI-YGSKSPRLASFKNF 121
Query: 273 ALLACFLASFTCFIQSARYFVHASFLMSA-LAGDAAPPVGDAQRAVVRGGNFWAAGLRAL 331
A+L CFL +F C IQS RY+ H SFL++ ++ R + R FW+ GLRA
Sbjct: 122 AILICFLMAFLCNIQSIRYYAHVSFLVTVPVSRGKREHCEYVSRNLNRASYFWSLGLRAF 181
Query: 332 YLATALLMWVFGPVPMLACSVLTVAALHRLD-ANSMPLHHHRFTARST 378
Y + L +W FGP+PM C + + L+ LD S H H + R T
Sbjct: 182 YFSFPLFLWTFGPIPMFVCCCMMSSILYFLDTTTSFTRHLHSQSFRET 229
>AT5G24600.1 | chr5:8421790-8423342 REVERSE LENGTH=249
Length = 248
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 17/223 (7%)
Query: 153 KSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESA 212
+ +D LVP GLA+MV YHL LL+RI+ P +TV+G N+ WV+ M++ ++ +
Sbjct: 3 REYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSS-KNGV 61
Query: 213 LALGVISDNISAATTLASLCIALGSLIGAWVSSSPAPGAAGVVVLGYGDGSHATATVKCV 272
LA+ + +NI A+T LAS I L SLI ++S+ + V +GD S ++K
Sbjct: 62 LAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFV---FGDKSDRAFSLKFF 118
Query: 273 ALLACFLASFTCFIQSARYFVHASFLM-----------SALAGDAAPPVGDAQRA--VVR 319
A+L CFL +F +QS RY+ HAS L+ S G+ + + A V R
Sbjct: 119 AILVCFLVAFLLNVQSIRYYSHASILINVPFKQLMAVSSGGRGNGSLMINQDYVAATVNR 178
Query: 320 GGNFWAAGLRALYLATALLMWVFGPVPMLACSVLTVAALHRLD 362
G FW+ GLRA Y ++ L +W+FGP+PM + V +L+ LD
Sbjct: 179 GSYFWSLGLRAFYFSSPLFLWIFGPIPMFITCCVLVCSLYFLD 221
>AT5G10580.1 | chr5:3347511-3348657 FORWARD LENGTH=247
Length = 246
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 153 KSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESA 212
K +D VLVP L +M GYH+ L +++ P T++G + + +WV +++ +++
Sbjct: 5 KWYLDAVLVPSALLMMFGYHIYLWYKVRTDPFCTIVGTNSRARRSWVAAIMKDNE-KKNI 63
Query: 213 LALGVISDNISAATTLASLCIALGSLIGAWVSSS---PAPGAAGVVVLGYGDGSHATATV 269
LA+ + + I T +A+ CI L + + A +SS+ P V YG T +
Sbjct: 64 LAVQTLRNTIMGGTLMATTCILLCAGLAAVLSSTYSIKKPLNDAV----YGAHGDFTVAL 119
Query: 270 KCVALLACFLASFTCFIQSARYFVHASFLMSALAGDAAPPVGDAQRAVV---------RG 320
K V +L FL +F S R+ + L++A + G+ V +
Sbjct: 120 KYVTILTIFLFAFFSHSLSIRFINQVNILINAPQEPFSDDFGEIGSFVTPEYVSELLEKA 179
Query: 321 GNFWAAGLRALYLATALLMWVFGPVPMLACSVLTVAALHRLD 362
G R Y+ L++W+FGPV + S L + L+ LD
Sbjct: 180 FLLNTVGNRLFYMGLPLMLWIFGPVLVFLSSALIIPVLYNLD 221
>AT4G31330.1 | chr4:15202354-15203151 FORWARD LENGTH=240
Length = 239
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 23/221 (10%)
Query: 156 MDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESALAL 215
+D++LVP GL + YH+ L H++ P TT+IG + WV +++ +++ LA+
Sbjct: 8 LDVILVPLGLMVYASYHVYLWHKLRTQPLTTIIGTNARARRFWVASIIK-DNDKKNILAV 66
Query: 216 GVISDNISAATTLASLCIALGSLIGAWVSSSPA---PGAAGVVVLGYGDGSHATATVKCV 272
+ + I +T +A+ I L + + A +SS+ A P V +G +K V
Sbjct: 67 QTLRNCIMGSTLMATTSILLCAGLAAVLSSTYAVKKPLNDAV----FGARGEFMVALKYV 122
Query: 273 ALLACFLASFTCFIQSARYFVHASFLMSALAGDAAPP-------VGDAQRAVV----RGG 321
+L FL SF S R+ + L++ PP + A+ V RG
Sbjct: 123 TILTIFLFSFFSHSLSIRFINQVNILINT----PFPPEELEDEMMMTAEEYVAELLERGF 178
Query: 322 NFWAAGLRALYLATALLMWVFGPVPMLACSVLTVAALHRLD 362
G R Y A L++W+FGPV + CSV+ V L+ LD
Sbjct: 179 ILNTVGNRLFYAALPLMLWIFGPVLVFLCSVVMVPLLYNLD 219
>AT5G24790.1 | chr5:8512076-8513064 FORWARD LENGTH=247
Length = 246
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 153 KSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESA 212
K +D +LVP L +M+ YH+ L + +P +T++G +H + W+ M++ + +
Sbjct: 5 KWYLDAILVPLALMMMICYHIYLSFMVRTNPFSTLLGINSHGRRIWISAMIKDNQ-KTNI 63
Query: 213 LALGVISDNISAATTLASLCIALGSLIGAWVSSS---PAPGAAGVVVLGYGDGSHATATV 269
LA+ + + + AT +A+ C+ L + + A +SS+ P V +G ++
Sbjct: 64 LAVQTLRNIVMGATLMATTCVLLCAGLAAVLSSTYSIKKPLNDAV----FGAHGDFAISI 119
Query: 270 KCVALLACFLASFTCFIQSARYFVHASFLMSALAGDAAPP-----VGDAQRAVVRGGNFW 324
K + +L F+ SF S R+ + L++ D P + + G F
Sbjct: 120 KYLTILTIFIFSFFFHSLSIRFLNQVAILVNIPNLDPNPSGCVFLTSEHVSEMFEKGIFL 179
Query: 325 -AAGLRALYLATALLMWVFGPVPMLACSVLTVAALHRLD 362
G R Y +L++W+FGP+ + ++ V L LD
Sbjct: 180 NTVGNRLFYAGFSLMLWIFGPILVFFSVLVMVLVLSHLD 218
>AT5G43180.1 | chr5:17336425-17337816 REVERSE LENGTH=240
Length = 239
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 20/227 (8%)
Query: 153 KSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESA 212
K D ++VP L I VGYH+ L + +P T +G ++ + +W R ++ +
Sbjct: 4 KIDTDSIVVPLSLLIAVGYHVFLWNTFKHNPSRTSLGIDSSKRKSWF-RDIKEGDDKTGM 62
Query: 213 LALGVISDN----ISAATTLASLCIALGSLIGAWVSSSPAPGAAGVVVLGYGDGSHATAT 268
LA+ + + I AT + ++L ++ +S AA + +G +
Sbjct: 63 LAVQSLRNKKMVTILTATIAILIFLSLAAVTNNAFKASHLITAADDIF--FGSQNAKIFV 120
Query: 269 VKCVALLACFLASFTCFIQSARYFVHASFLMSALA----GD--------AAPPVGDAQRA 316
+K + ASF + Y + A FL++A+A GD + R
Sbjct: 121 LKYASASLLLAASFFFSSIALSYLMDAIFLINAIAKKHEGDCDCAYDITGTSSFREYTRL 180
Query: 317 VVRGGNFWA-AGLRALYLATALLMWVFGPVPMLACSVLTVAALHRLD 362
V+ G F A G R + ++ LL+W+FGP+P+LA S+ V L++ D
Sbjct: 181 VLERGFFMAMVGNRVMCVSIPLLLWMFGPLPVLASSLGLVWVLYQFD 227
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,216,628
Number of extensions: 313426
Number of successful extensions: 1023
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 7
Length of query: 415
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 314
Effective length of database: 8,337,553
Effective search space: 2617991642
Effective search space used: 2617991642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 113 (48.1 bits)