BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0317700 Os09g0317700|AK101117
         (495 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41220.1  | chr5:16494560-16496969 REVERSE LENGTH=591           62   8e-10
AT5G41240.1  | chr5:16498293-16500811 REVERSE LENGTH=592           57   3e-08
AT3G47680.1  | chr3:17577483-17578391 REVERSE LENGTH=303           55   7e-08

>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
          Length = 590

 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 24/165 (14%)

Query: 97  PSDQGTPHSVTGPGQQDDD----DAEPERTARRLAWTEEEDIRLISTWLIN--------- 143
           P  Q      +  G++ DD        +R   R  W+  ED  LIS WL           
Sbjct: 238 PGPQSKIIQFSTIGEKSDDPNLVQNTTDRRKHRRKWSRAEDAILISAWLNTSKDPIVDNE 297

Query: 144 YKTDKYWDKVAAEYNSATPGAR--RREVKHLKNRWQRMINKVAHFNDCWCRVMAKYPSGQ 201
           +K   +W ++ A +N++   A   +RE  H K RW ++ +KV  F  C+ + + +  SGQ
Sbjct: 298 HKACAFWKRIGAYFNNSASLANLPKREPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQ 357

Query: 202 SEGMQQMDKTWLMYNKEAHVMYLEEAKHKFTFGHCWNAVWDQPKW 246
           SE     D  + +    A+ +Y    K  FT  H W  +    KW
Sbjct: 358 SE-----DDVFQV----AYQVYTNNYKSNFTLEHAWRELRHSKKW 393



>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
          Length = 591

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 27/175 (15%)

Query: 120 ERTARRLAWTEEEDIRLISTWLINYKTDK-----------YWDKVAAEYNSATPGAR--R 166
           +R ARR  W+  +D+ LIS WL   K  K           +W ++ A  +++   A   +
Sbjct: 265 DRKARRRKWSPPDDVILISAWLNTSKDRKVVVYDEQQAHTFWKRIGAHVSNSASLANLPK 324

Query: 167 REVKHLKNRWQRMINKVAHFNDCWCRVMAKYPSGQSEGMQQMDKTWLMYNKEAHVMYLEE 226
           RE  H + RW+++ + V  F  C+ + + +  SGQSE     D  + +    A+ +Y   
Sbjct: 325 REWNHCRQRWRKINDYVCKFVGCYDQALNQRASGQSE-----DDVFQV----AYQLYYNN 375

Query: 227 AKHKFTFGHCWNAVWDQPKWKEYISSFSAK-----RVMRSESGGYVSSSEDSEDM 276
               F   H W  +    KW    +S ++K     +  +   GG  SSS + E +
Sbjct: 376 YMSNFKLEHAWRELRHNKKWCSTYTSENSKGGGSSKRTKLNGGGVYSSSCNPESV 430



>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
          Length = 302

 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 30/152 (19%)

Query: 114 DDDAEPERTA-------RRLAWTEEEDIRLISTWLINYKTD---------KYWDKVAAEY 157
           DDD  P + A        R  W+  ED+ L+S WL   K            +W ++AA Y
Sbjct: 29  DDDVSPNQAAHTPKVKRERRKWSAGEDLVLVSAWLNTSKDAVIGNEQKGYAFWSRIAA-Y 87

Query: 158 NSATP---GARRREVKHLKNRWQRMINKVAHFNDCWCRVMAKYPSGQSEGMQQMDKTWLM 214
             A+P   G  +RE  H+K RW ++   V  F   +     +  SGQ++     D   L 
Sbjct: 88  YGASPKLNGVEKRETGHIKQRWTKINEGVGKFVGSYEAATKQKSSGQNDD----DVVAL- 142

Query: 215 YNKEAHVMYLEEAKHKFTFGHCWNAVWDQPKW 246
               AH +Y  E   KFT  H W  +  + KW
Sbjct: 143 ----AHEIYNSE-HGKFTLEHAWRVLRFEQKW 169



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.128    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,037,341
Number of extensions: 473654
Number of successful extensions: 1559
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 3
Length of query: 495
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 392
Effective length of database: 8,282,721
Effective search space: 3246826632
Effective search space used: 3246826632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)