BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0315800 Os09g0315800|AK121947
         (469 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14910.1  | chr3:5015432-5017566 FORWARD LENGTH=456            479   e-135

>AT3G14910.1 | chr3:5015432-5017566 FORWARD LENGTH=456
          Length = 455

 Score =  479 bits (1234), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/396 (59%), Positives = 298/396 (75%), Gaps = 12/396 (3%)

Query: 76  RPALGPDDGR-ISAVEWVPLXXXXXXXXXXXXXXXXXXXXXXWLLFYSLAGDLLHKQSIY 134
           RP L P +   I+A+EW+                        +LL YS+ GDL+HKQ ++
Sbjct: 68  RPDLSPIEAESITAIEWLVFDDVRVVVAGTSCG---------YLLVYSVTGDLIHKQIVH 118

Query: 135 PSKILKLNFRERKENAWEDSGSDELSVVFPGVIARFDGADLQNMLQKSLHEVKSHLWKDK 194
            S+ILK+  R  K++  +++ S+E+ +V PGVIARFDG+++Q+M+QK + E  S+ W  K
Sbjct: 119 QSRILKIRVRGTKKDLMQETSSEEICIVLPGVIARFDGSNIQSMVQKWVQEKNSNFWDQK 178

Query: 195 SEQEDAEEDSS-FGRIPFQIWNVSKFSSCADAAIVGLMPPPLLELQSSQRHYCAITVGED 253
           + + DAE+  S + R+P+QIWNV+K   C DA + G+MPPPLLELQSSQR+YCA+T+GED
Sbjct: 179 NRKGDAEDTGSLYQRLPYQIWNVNKNGVCVDATVTGVMPPPLLELQSSQRYYCAVTIGED 238

Query: 254 AVVSAYRLSEDRSRSIVGAILSRGVAATFSTISSLSKIIWRS-EPSPTKKSRPKPQSFAK 312
           +V+SAYRLSEDR RS+VGAILS+ V A  STI+S SK+IWRS + SP +K   K QSFA+
Sbjct: 239 SVISAYRLSEDRGRSLVGAILSKVVPAAASTIASFSKLIWRSNDQSPKRKPEAKTQSFAR 298

Query: 313 TSPLTCLKDSPRKGERLTLSPSGTLAAITDSLGRILLLDTHALVAVRLWKGYRDASCLFV 372
            S LTC+KD PRKGE+LTLSPSGTLAAITDSLGRILLLDT ALV VRLWKGYRDASC+F+
Sbjct: 299 ASSLTCIKDYPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM 358

Query: 373 EMLLNKDKASSSLHTEYTKSDYCLCLAIHAPRKGIIEIWQMRTGARLLTIPCPKGSRILQ 432
           EML  KDK  S +HTE  KSDYCLCLAIHAPRKGIIE+WQMRTG RLLTI C KGS++LQ
Sbjct: 359 EMLAKKDKGKSVIHTEPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKLLQ 418

Query: 433 PSTRFMSSPFSSLYSPLEVYLFNGDSGQLSVLNRHI 468
           P+ RF S+  SS Y PLEV+L NGDSGQ+S+LNR +
Sbjct: 419 PAYRFGSNSSSSPYIPLEVFLLNGDSGQVSMLNRSL 454



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,877,833
Number of extensions: 358116
Number of successful extensions: 1137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1135
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 367
Effective length of database: 8,310,137
Effective search space: 3049820279
Effective search space used: 3049820279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)