BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0298100 Os09g0298100|J065106F19
         (42 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20950.1  | chr1:7297467-7301336 REVERSE LENGTH=615             55   8e-09
AT1G76550.1  | chr1:28722900-28726929 REVERSE LENGTH=618           55   8e-09

>AT1G20950.1 | chr1:7297467-7301336 REVERSE LENGTH=615
          Length = 614

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 28/31 (90%)

Query: 1   QVVGVPVSLNGDLKNQFVETTVGFDTVCKVS 31
           +VVGVPV+ NGDLKNQFVE  VGFDT+CKV+
Sbjct: 211 KVVGVPVTTNGDLKNQFVEANVGFDTICKVN 241



>AT1G76550.1 | chr1:28722900-28726929 REVERSE LENGTH=618
          Length = 617

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 28/31 (90%)

Query: 1   QVVGVPVSLNGDLKNQFVETTVGFDTVCKVS 31
           +VVGVPV++NGDLKNQFVE  VGFDT CKV+
Sbjct: 211 KVVGVPVTINGDLKNQFVEANVGFDTTCKVN 241



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 871,420
Number of extensions: 18488
Number of successful extensions: 38
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 42
Length of database: 11,106,569
Length adjustment: 16
Effective length of query: 26
Effective length of database: 10,667,913
Effective search space: 277365738
Effective search space used: 277365738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)