BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0297100 Os09g0297100|AK104965
         (148 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36060.2  | chr2:15143012-15143998 REVERSE LENGTH=147          249   3e-67
AT3G52560.4  | chr3:19494678-19495954 REVERSE LENGTH=165          238   1e-63
AT1G70660.1  | chr1:26640755-26641949 FORWARD LENGTH=160          205   6e-54
AT1G23260.1  | chr1:8257209-8258573 REVERSE LENGTH=159            205   7e-54
AT5G25760.1  | chr5:8967983-8969173 FORWARD LENGTH=158             55   1e-08
AT1G50490.1  | chr1:18705005-18706303 REVERSE LENGTH=181           50   6e-07
AT1G14400.1  | chr1:4927294-4928136 REVERSE LENGTH=153             49   9e-07
AT2G02760.1  | chr2:774271-775149 FORWARD LENGTH=153               49   1e-06

>AT2G36060.2 | chr2:15143012-15143998 REVERSE LENGTH=147
          Length = 146

 Score =  249 bits (636), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 116/135 (85%), Positives = 122/135 (90%), Gaps = 1/135 (0%)

Query: 15  PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHN-SVHEGRIYQLKLF 73
           PRNFR      RGEKGIGDGTVSYGMDD DDIYMRSWTGTIIGPHN +VHEGRIYQLKLF
Sbjct: 12  PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEGRIYQLKLF 71

Query: 74  CDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTMETILTQLKKEMAT 133
           CDKDYPEKPP+VRFHSRINM+CVNH+TG VDS+KFGVLANWQR+YTME ILTQLKKEMA 
Sbjct: 72  CDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAA 131

Query: 134 PQNRKLVQPPEGTFF 148
             NRKLVQPPEGTFF
Sbjct: 132 SHNRKLVQPPEGTFF 146



>AT3G52560.4 | chr3:19494678-19495954 REVERSE LENGTH=165
          Length = 164

 Score =  238 bits (606), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 120/152 (78%), Gaps = 18/152 (11%)

Query: 15  PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHN-------------- 60
           PRNFR      RGEKGIGDGTVSYGMDD DDIYMRSWTGTIIGPHN              
Sbjct: 13  PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNIMPLLLLLVVTEIN 72

Query: 61  ----SVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQR 116
               +VHEGRIYQLKLFCDKDYPEKPP+VRFHSR+NM+CVNHETG VD +KFG+LANWQR
Sbjct: 73  FMSQTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQR 132

Query: 117 EYTMETILTQLKKEMATPQNRKLVQPPEGTFF 148
           EYTME IL QLKKEM+T  NRKLVQPPEGT F
Sbjct: 133 EYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 164



>AT1G70660.1 | chr1:26640755-26641949 FORWARD LENGTH=160
          Length = 159

 Score =  205 bits (522), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 107/131 (81%)

Query: 15  PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNSVHEGRIYQLKLFC 74
           PRNFR      RGEKGIGDGTVSYGMDDADDI M+SWTGTI+GPHN+ +EG+I+QLKLFC
Sbjct: 11  PRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFC 70

Query: 75  DKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTMETILTQLKKEMATP 134
            KDYPE PP+VRF SRINM+CVN E G VD   F +L+NW+RE+TME +L QLKKEM + 
Sbjct: 71  GKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSS 130

Query: 135 QNRKLVQPPEG 145
           QNRKL QP EG
Sbjct: 131 QNRKLAQPLEG 141



>AT1G23260.1 | chr1:8257209-8258573 REVERSE LENGTH=159
          Length = 158

 Score =  205 bits (522), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 107/131 (81%)

Query: 15  PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNSVHEGRIYQLKLFC 74
           PRNFR      RGEKGIGDGTVSYGMDDADDIYM+SWTGTI+GP N+ +EG+I+QLKLFC
Sbjct: 11  PRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFC 70

Query: 75  DKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTMETILTQLKKEMATP 134
            K+YPE PP+VRF +RINM+CVN ETG V+   F +L NW+REYTME IL +LKKEM T 
Sbjct: 71  GKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTS 130

Query: 135 QNRKLVQPPEG 145
            NRKL QPPEG
Sbjct: 131 HNRKLAQPPEG 141



>AT5G25760.1 | chr5:8967983-8969173 FORWARD LENGTH=158
          Length = 157

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 43  ADDIYMRSWTGTIIGPHNSVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGA 102
            DD  +  WT  I GP  + +EG ++QL     + YP +PP VRF ++I    V+ +TG 
Sbjct: 29  CDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGE 88

Query: 103 VDSRKFGVLAN-WQREYTMETILTQLKKEMATPQ 135
           +      +L N W   +T++++   +   MA P+
Sbjct: 89  I---CLDILKNAWSPAWTLQSVCRAIIALMAHPE 119



>AT1G50490.1 | chr1:18705005-18706303 REVERSE LENGTH=181
          Length = 180

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 42  DADDIYMRSWTGTIIGPHNSVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETG 101
           + D+I+   W GTI G  ++V EG  Y+L L    DYP KPP V+F +     C +    
Sbjct: 60  EEDNIFC--WKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFET----CCFHPNVD 113

Query: 102 AVDSRKFGVLAN-WQREYTMETILTQLKKEMATP 134
              +    +L + W   Y + TIL  ++  +  P
Sbjct: 114 VYGNICLDILQDKWSSAYDVRTILLSIQSLLGEP 147



>AT1G14400.1 | chr1:4927294-4928136 REVERSE LENGTH=153
          Length = 152

 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 51  WTGTIIGPHNSVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGV 110
           W   I GP ++  +G  ++L L   +DYP KPP+VRF SR+    + +  G++      +
Sbjct: 36  WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI-YADGSI---CLDI 91

Query: 111 LAN-WQREYTMETILTQLKKEMATP 134
           L N W   Y +  ILT ++  +  P
Sbjct: 92  LQNQWSPIYDVAAILTSIQSLLCDP 116



>AT2G02760.1 | chr2:774271-775149 FORWARD LENGTH=153
          Length = 152

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 51  WTGTIIGPHNSVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGV 110
           W   I GP ++  +G  ++L L   +DYP KPP+VRF SR+    + +  G++      +
Sbjct: 36  WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI-YADGSI---CLDI 91

Query: 111 LAN-WQREYTMETILTQLKKEMATP 134
           L N W   Y +  ILT ++  +  P
Sbjct: 92  LQNQWSPIYDVAAILTSIQSLLCDP 116



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,262,832
Number of extensions: 131780
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 8
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)