BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0296700 Os09g0296700|AK070245
         (487 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10630.1  | chr3:3321722-3323185 REVERSE LENGTH=488            475   e-134

>AT3G10630.1 | chr3:3321722-3323185 REVERSE LENGTH=488
          Length = 487

 Score =  475 bits (1223), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/415 (56%), Positives = 286/415 (68%), Gaps = 11/415 (2%)

Query: 70  SPDARRPPCVLWMAPFASGGGYCSEAWSYVASLEEHXXXXXXXXXXXXXXHHGDLESPEF 129
           +P +  P CVLWMAPF S GGY SEAWSYV SL  H              HHGDLES EF
Sbjct: 78  NPASSTPHCVLWMAPFLSSGGYSSEAWSYVLSLRNHLTNPRFRITIE---HHGDLESVEF 134

Query: 130 WLGLPEESKNMAYRLATARCELSRAVVVCHSEPGAWYPPMYESLPCPPTGYDEPAFVIGR 189
           W GL +E+K +A  +   +C  +  +VVCHSEPGAWYPP++E+LPCPPTGY++   VIGR
Sbjct: 135 WNGLAKETKEVAIEMYREQCRPNETIVVCHSEPGAWYPPLFETLPCPPTGYEDFLSVIGR 194

Query: 190 TMFETDRVSPEHVRRCNQMDAVWVPTEFHVSTFXXXXXXXXXXXXXXXXXXXXFFDPAKH 249
           TMFETDRV+PEHV+RCNQMD VWVPT+FHVS+F                    FFDP+K+
Sbjct: 195 TMFETDRVNPEHVKRCNQMDHVWVPTDFHVSSFVQSGVDSSKVVKIVQPVDVGFFDPSKY 254

Query: 250 AAIPLPIGVPVMVPDDSRLDPVNSKGKGFVFLSVFKWEQRKGWDVLLRAFLQEFSGADDV 309
             + L      M   D  L   +    GFVFLSVFKWEQRKGWDVLL+A+L EFSG D+V
Sbjct: 255 KPLDL------MAVGDLVLG--SGMKNGFVFLSVFKWEQRKGWDVLLKAYLSEFSGEDNV 306

Query: 310 VLYLLINAYHSDTDFDRKIRSFVKDSSIEKPMDGWAEVRLIDEHIPQSALPRLYKAADAF 369
            L+LL NAYHSD+DF  KI  FV++ +IE+P +G+  V +ID+HI Q  LPRLYKAADAF
Sbjct: 307 ALFLLTNAYHSDSDFGNKILDFVEEMNIEEPRNGYPFVYVIDKHIAQVDLPRLYKAADAF 366

Query: 370 VLPSRGEGWGRPVVEAMSMELPVIVTNWSGPTEYLNEENGYPLDIDRLTEVTEGPFKGHL 429
           VLP+RGEGWGRP+VEAM+M LPVI TNWSGPTEYL E NGYPL ++ ++EV EGPF+GH 
Sbjct: 367 VLPTRGEGWGRPIVEAMAMSLPVITTNWSGPTEYLTERNGYPLVVEEMSEVKEGPFEGHQ 426

Query: 430 CAEPSVDRLRTLMRHVFSDXXXXXXXXXXXXXDMVERFSPAIVATIVADKIQQAL 484
            AEPSVD+LR LMR V S+             DMV+ F+P +VA +VAD+I +  
Sbjct: 427 WAEPSVDKLRVLMRRVMSNPDEAKVKGKRGRDDMVKNFAPEVVAKVVADQIARIF 481



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,532,822
Number of extensions: 392786
Number of successful extensions: 707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 385
Effective length of database: 8,310,137
Effective search space: 3199402745
Effective search space used: 3199402745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)