BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0280300 Os09g0280300|AK073346
         (359 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20790.1  | chr3:7268802-7271099 FORWARD LENGTH=356            444   e-125

>AT3G20790.1 | chr3:7268802-7271099 FORWARD LENGTH=356
          Length = 355

 Score =  444 bits (1143), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/359 (59%), Positives = 260/359 (72%), Gaps = 4/359 (1%)

Query: 1   MAGDGLPRIAVVGAGIFARTQYIPRLREIAHLVLLKTIWSRTKXXXXXXXXXXXXXXXXI 60
           M     P IA++GAGIF +TQYIPRL EI+ LV LK IWSRT+                +
Sbjct: 1   MVNPSSPGIAILGAGIFVKTQYIPRLAEISDLVDLKAIWSRTEESAKGAVEIARKHFPEV 60

Query: 61  QPRWGDAGLEEIMGDASISXXXXXXXXXXXXDLSLKMLKAGKHVIQEKPASGSTMEAETA 120
           + +WGD GL EI+ D+SI             +LSLKMLKAGKHV+QEKPA+ S  E ETA
Sbjct: 61  KCKWGDEGLNEIIQDSSIVGVAVVVAAETMVELSLKMLKAGKHVLQEKPAAASISEIETA 120

Query: 121 LSVYNSFPNQFPYKPIWALAENYRFEPAFVESRKLMSDIGDMMNIQVIVEGSMNSSNPYF 180
           +S Y +     P +PIWA+AENYRFEPAFVE +KL+++IGDMMN+Q+I+EGSMNSSNPYF
Sbjct: 121 MSSYRNISADSPCRPIWAVAENYRFEPAFVELKKLIAEIGDMMNVQLIIEGSMNSSNPYF 180

Query: 181 NSSWRRNFVGGFILDMGVHFIAGLRMMVGSEIATVSSISRHVDKALPPPDNICSLFQLEN 240
           +SSWRRN  GGFILDMGVH+IAGLRM+VG E+ +VS+ + HVDK LP PDNI S FQLEN
Sbjct: 181 SSSWRRNLSGGFILDMGVHYIAGLRMLVGCEVTSVSATTTHVDKTLPGPDNITSNFQLEN 240

Query: 241 GCAGVFVFAVNSRTPKILWRVDGTRGTVQIERGIASGKHGYQVLFTNENGQCQTTFYPFC 300
           GC+GVFV  V+SR+PKILWR+ G +GTVQ+ERG+  G+HGY      E G  +T FYPF 
Sbjct: 241 GCSGVFVMVVSSRSPKILWRIVGLKGTVQLERGVEGGRHGYMATIYGEGGTSRTIFYPFS 300

Query: 301 GVNEELKAFVHDIVQANKDGDHKAEPRSSYVEGARDVAVLEAMLESSAKQGTMVQVKKF 359
           GV EELKAF +DI + +K+     EPR SYVEGARDVAVLEAMLES AK G +V V KF
Sbjct: 301 GVTEELKAFFNDISETSKE----QEPRLSYVEGARDVAVLEAMLESGAKNGAVVPVNKF 355



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,206,970
Number of extensions: 279793
Number of successful extensions: 498
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,364,969
Effective search space: 2166526971
Effective search space used: 2166526971
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)