BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0272500 Os09g0272500|AK071858
(237 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55600.1 | chr3:20620682-20622341 FORWARD LENGTH=241 248 1e-66
AT1G54110.1 | chr1:20199909-20201623 FORWARD LENGTH=237 235 2e-62
>AT3G55600.1 | chr3:20620682-20622341 FORWARD LENGTH=241
Length = 240
Score = 248 bits (634), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 171/241 (70%), Gaps = 6/241 (2%)
Query: 1 MGISKTEVNLLRLLDSAPRQQNQAKLIHYVTTSRELLEKLAAENTSEGISSIAKGRLNEY 60
MGISKTE+NL RLL +AP QQNQ+KL+HYV T RE LE+L+ E T EG+ + K ++NEY
Sbjct: 2 MGISKTEINLRRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTPEGLPRVTKAKVNEY 61
Query: 61 SERIEELAARLASLVPGYENAVEAIRKEESYLEGEQI----RSPIALSPGLRRRLTALQE 116
E+IE +A+++AS P E + E K+ + +I RSP SP LRRR+
Sbjct: 62 YEKIEAVASKIASQEPETEVSDEPFAKDSTSGSSPKIEDEPRSPT--SPQLRRRIVPASS 119
Query: 117 IEQPTNAKERNVAEPLRLDEAAQANIEKYRNLQEDLTDEIVELARQLKDSSLMMNQSVQA 176
EQ +A + + ++P++LD AAQA+I+K+R LQEDLTDE+V LARQLK+ S ++QSVQ
Sbjct: 120 KEQSFDAADADSSKPIKLDTAAQAHIDKHRKLQEDLTDEMVVLARQLKERSQAISQSVQN 179
Query: 177 TEKILDSTERAVAYSLAGTDRANAQAVEVSSLTSKTTCFQWFLLFVMTCMFIMVVLLIRV 236
TEKILDSTE A+ SLA T A +A ++ S +SKT+CFQW L+F M C+FIMVVLLIRV
Sbjct: 180 TEKILDSTEEAIEQSLASTGHATTRATKIYSQSSKTSCFQWLLIFAMICVFIMVVLLIRV 239
Query: 237 T 237
T
Sbjct: 240 T 240
>AT1G54110.1 | chr1:20199909-20201623 FORWARD LENGTH=237
Length = 236
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 166/241 (68%), Gaps = 9/241 (3%)
Query: 1 MGISKTEVNLLRLLDSAPRQQNQAKLIHYVTTSRELLEKLAAENTSEGISSIAKGRLNEY 60
MGI KTE+N +RLL +AP QQNQ+KL+HYV T RE LE+L+ E T EG+ + ++NEY
Sbjct: 1 MGIGKTEINFMRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTLEGLPRVTNAKVNEY 60
Query: 61 SERIEELAARLASLVPGYENAVEAIRKEESYLEGEQI----RSPIALSPGLRRRLTALQE 116
E+IE + +R+ + VP E + EA K+ + ++ R+P SP LRRR+
Sbjct: 61 YEKIEAVVSRIVAQVPHTEVSDEAFAKDSTNDSSPKVEDDTRTPN--SPQLRRRIVPASS 118
Query: 117 IEQPTNAKERNVAEPLRLDEAAQANIEKYRNLQEDLTDEIVELARQLKDSSLMMNQSVQA 176
EQ +A + ++P++LD AAQA + K R LQEDLTDE+V LARQLK+ S M++QSVQ
Sbjct: 119 KEQSYDA---DPSKPIKLDTAAQAQVNKQRKLQEDLTDEMVVLARQLKERSQMISQSVQN 175
Query: 177 TEKILDSTERAVAYSLAGTDRANAQAVEVSSLTSKTTCFQWFLLFVMTCMFIMVVLLIRV 236
TEKILDSTE A+ SLA T A +A ++ S +SKT+CFQW L+ MTC+FIMVV+LIRV
Sbjct: 176 TEKILDSTEEAIEQSLASTGHATVRATKIYSESSKTSCFQWLLILAMTCVFIMVVMLIRV 235
Query: 237 T 237
T
Sbjct: 236 T 236
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.127 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,957,090
Number of extensions: 139986
Number of successful extensions: 598
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)