BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0261300 Os09g0261300|AK059648
(303 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47760.1 | chr5:19343121-19344979 REVERSE LENGTH=302 427 e-120
AT5G36700.1 | chr5:14421929-14424430 REVERSE LENGTH=363 395 e-110
AT5G36790.1 | chr5:14481229-14483730 REVERSE LENGTH=363 395 e-110
>AT5G47760.1 | chr5:19343121-19344979 REVERSE LENGTH=302
Length = 301
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 200/295 (67%), Positives = 245/295 (83%), Gaps = 1/295 (0%)
Query: 9 LLTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSR 68
LL++ +SL DSVD FLFDCDGVIWKG+ LI+GV +TLDL+R GK +VFVTNNS KSR
Sbjct: 5 LLSSSNFKSLFDSVDTFLFDCDGVIWKGETLIDGVSQTLDLIRSKGKNVVFVTNNSVKSR 64
Query: 69 RQYAKKFRALGL-EVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFE 127
RQYA+KFR+LG+ +T++EIF+SSFAAAM+LK+NNF +KKVYV+G +G+LEEL++AGF
Sbjct: 65 RQYAEKFRSLGVTSITQDEIFSSSFAAAMYLKVNNFPKDKKVYVIGGEGVLEELQIAGFT 124
Query: 128 CLGGPEDGKKNILLEANFYFEHDKSVGAVIVGLDQYFNYYKMQYASLCIRENPGCLFIAT 187
LGGPEDG+K ++N FEHDKSVGAV+VGLD NYYK+QY +LC+RENPGCLFIAT
Sbjct: 125 GLGGPEDGEKKAQWKSNSLFEHDKSVGAVVVGLDPNINYYKLQYGTLCVRENPGCLFIAT 184
Query: 188 NRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGKPSSFLMDFLLKSFNLETSRMCMV 247
NRD GHMT +QEWPGAG MVAA+ S ++EPIVVGKPS+F+MDFLL+ F ETSRMCMV
Sbjct: 185 NRDAVGHMTDLQEWPGAGCMVAAMCGSTEREPIVVGKPSTFMMDFLLQKFGTETSRMCMV 244
Query: 248 GDRLDTDILFGQNTGCKTLLVLSGVTTLPELQDASNTIHPDLYTNSVYDLVGLLQ 302
GDRLDTDILFGQN GCKTLLVL+GVT+ L D N I PD YT++V D++ L++
Sbjct: 245 GDRLDTDILFGQNAGCKTLLVLTGVTSESNLLDKGNKIEPDYYTSTVSDIIKLME 299
>AT5G36700.1 | chr5:14421929-14424430 REVERSE LENGTH=363
Length = 362
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/299 (63%), Positives = 233/299 (77%), Gaps = 2/299 (0%)
Query: 2 ANGLPNPLLTA--DAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVF 59
+N P + T + A L+DSV+ F+FDCDGVIWKGD+LIEGVPETLD+LR GK+LVF
Sbjct: 57 SNITPRAMATQQLENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRAKGKRLVF 116
Query: 60 VTNNSRKSRRQYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILE 119
VTNNS KSR+QY KKF LGL V EEEIF SSFAAA +L+ NF +KKVYV+GE+GIL+
Sbjct: 117 VTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAAAAYLQSINFPKDKKVYVIGEEGILK 176
Query: 120 ELRLAGFECLGGPEDGKKNILLEANFYFEHDKSVGAVIVGLDQYFNYYKMQYASLCIREN 179
EL LAGF+ LGGP+DGK+ I L+ F EHD VGAV+VG D+YFNYYK+QY +LCIREN
Sbjct: 177 ELELAGFQYLGGPDDGKRQIELKPGFLMEHDHDVGAVVVGFDRYFNYYKIQYGTLCIREN 236
Query: 180 PGCLFIATNRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGKPSSFLMDFLLKSFNL 239
PGCLFIATNRD H+T QEW G G+MV A+ S Q+EP+VVGKPS+F+MD+L F +
Sbjct: 237 PGCLFIATNRDAVTHLTDAQEWAGGGSMVGALVGSTQREPLVVGKPSTFMMDYLADKFGI 296
Query: 240 ETSRMCMVGDRLDTDILFGQNTGCKTLLVLSGVTTLPELQDASNTIHPDLYTNSVYDLV 298
+ S++CMVGDRLDTDILFGQN GCKTLLVLSGVT++ L+ N I PD YT+ + D +
Sbjct: 297 QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSISMLESPENKIQPDFYTSKISDFL 355
>AT5G36790.1 | chr5:14481229-14483730 REVERSE LENGTH=363
Length = 362
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/299 (63%), Positives = 233/299 (77%), Gaps = 2/299 (0%)
Query: 2 ANGLPNPLLTA--DAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVF 59
+N P + T + A L+DSV+ F+FDCDGVIWKGD+LIEGVPETLD+LR GK+LVF
Sbjct: 57 SNITPRAMATQQLENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRAKGKRLVF 116
Query: 60 VTNNSRKSRRQYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILE 119
VTNNS KSR+QY KKF LGL V EEEIF SSFAAA +L+ NF +KKVYV+GE+GIL+
Sbjct: 117 VTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAAAAYLQSINFPKDKKVYVIGEEGILK 176
Query: 120 ELRLAGFECLGGPEDGKKNILLEANFYFEHDKSVGAVIVGLDQYFNYYKMQYASLCIREN 179
EL LAGF+ LGGP+DGK+ I L+ F EHD VGAV+VG D+YFNYYK+QY +LCIREN
Sbjct: 177 ELELAGFQYLGGPDDGKRQIELKPGFLMEHDHDVGAVVVGFDRYFNYYKIQYGTLCIREN 236
Query: 180 PGCLFIATNRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGKPSSFLMDFLLKSFNL 239
PGCLFIATNRD H+T QEW G G+MV A+ S Q+EP+VVGKPS+F+MD+L F +
Sbjct: 237 PGCLFIATNRDAVTHLTDAQEWAGGGSMVGALVGSTQREPLVVGKPSTFMMDYLADKFGI 296
Query: 240 ETSRMCMVGDRLDTDILFGQNTGCKTLLVLSGVTTLPELQDASNTIHPDLYTNSVYDLV 298
+ S++CMVGDRLDTDILFGQN GCKTLLVLSGVT++ L+ N I PD YT+ + D +
Sbjct: 297 QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSISMLESPENKIQPDFYTSKISDFL 355
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,854,828
Number of extensions: 297618
Number of successful extensions: 615
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 3
Length of query: 303
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,419,801
Effective search space: 1726059205
Effective search space used: 1726059205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)