BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0249400 Os09g0249400|AK063577
(154 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53850.1 | chr3:19948262-19948994 REVERSE LENGTH=155 186 4e-48
AT5G02060.1 | chr5:404908-405774 FORWARD LENGTH=153 182 8e-47
AT3G23200.1 | chr3:8281659-8282603 FORWARD LENGTH=153 157 2e-39
AT2G28370.1 | chr2:12132092-12133447 FORWARD LENGTH=180 118 1e-27
AT2G37200.1 | chr2:15622098-15623047 REVERSE LENGTH=181 90 6e-19
AT3G50810.1 | chr3:18889002-18889868 REVERSE LENGTH=155 71 2e-13
AT1G49405.1 | chr1:18284335-18284947 REVERSE LENGTH=153 70 3e-13
AT4G37235.1 | chr4:17518052-17519671 FORWARD LENGTH=153 65 1e-11
>AT3G53850.1 | chr3:19948262-19948994 REVERSE LENGTH=155
Length = 154
Score = 186 bits (472), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 113/154 (73%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
MK ++G PGT G+ LR+ QC A AS+ M SA FS +TAFCYLIASMGLQLLWSFGL
Sbjct: 1 MKKLLGGPGTVCGLLLRIGQCASAAASIGVMVSAKEFSVHTAFCYLIASMGLQLLWSFGL 60
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
ACLD+Y+L+ K+DL NP+LVSLFVVGDWVTA+LS GV +L+E+D+ +C Q
Sbjct: 61 ACLDVYALRGKKDLQNPILVSLFVVGDWVTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQ 120
Query: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLASL 154
C RYE++V L+F+TW IA S+ FW+LAS+
Sbjct: 121 YPCLRYEVAVALSFVTWIQIAVSSHVTFWILASV 154
>AT5G02060.1 | chr5:404908-405774 FORWARD LENGTH=153
Length = 152
Score = 182 bits (461), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 113/151 (74%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
MK ++GSPGT SG+ LR+ QC A AS+ M S+Y FSNYTAFC+L+ASMGLQL+WSFGL
Sbjct: 1 MKKMIGSPGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQLIWSFGL 60
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
ACLD+Y+++ K DL +P+L+SLF VGDWVTA+L+ GVT+LF +D FCR P
Sbjct: 61 ACLDVYAIRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVTVLFTKDTEFCRQQPA 120
Query: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLL 151
LSC R+++SV L+F W A S+ +MFW+L
Sbjct: 121 LSCDRFQISVGLSFFNWFLAAISSHTMFWIL 151
>AT3G23200.1 | chr3:8281659-8282603 FORWARD LENGTH=153
Length = 152
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 109/153 (71%), Gaps = 2/153 (1%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
M D+ G+PGT +G+ LR+SQCVFA S+ M ++ GF ++TAFCYLIA+MGLQ++WSFGL
Sbjct: 1 MIDIPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGL 60
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
A LD ++L K+ L +PVLVSLFVVGDWVT+ LS G+T+L+ D+ C +
Sbjct: 61 AILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAE 120
Query: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLAS 153
C +Y+LSV LAF+ W IA S+++ WLLAS
Sbjct: 121 --CWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151
>AT2G28370.1 | chr2:12132092-12133447 FORWARD LENGTH=180
Length = 179
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 3/153 (1%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
M D+ G PGT G++LR Q +FA A++ MAS F + TAFCYL+A+ GLQ LWS L
Sbjct: 29 MDDMEGMPGTLLGLALRFFQFLFAAAALCVMASTSDFPSVTAFCYLVAATGLQSLWSLAL 88
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
A +D+Y++ KR L N LVSLF +GD VT+ L+F G+T+L + D++ C Q
Sbjct: 89 AMVDVYAIMVKRSLQNRRLVSLFAIGDGVTSTLTFAAACASAGITVLIDNDLNSCA---Q 145
Query: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLAS 153
C ++E S LAFI+W S + FW LAS
Sbjct: 146 NHCVQFETSTALAFISWFAALPSFLFNFWSLAS 178
>AT2G37200.1 | chr2:15622098-15623047 REVERSE LENGTH=181
Length = 180
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
MKDV G PGT G+ LR+SQ V A SV M + F + TAFC L+ ++ LQ LWS L
Sbjct: 31 MKDVQGMPGTTGGLILRLSQFVPALISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSLSL 90
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
+D Y+L +R L N +V F +GD VT+ L+F G+T+L D+ C +
Sbjct: 91 FIIDAYALLVRRSLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLIN-DLGQCNVN-- 147
Query: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLAS 153
C R+E + +AFI+W ++ S + FW LA+
Sbjct: 148 -HCTRFETATAMAFISWFAVSPSFILNFWSLAT 179
>AT3G50810.1 | chr3:18889002-18889868 REVERSE LENGTH=155
Length = 154
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
M+ V GS GT + +LR Q +F+ AS++ M + F ++T FCYL M + WS L
Sbjct: 1 MEHVPGSFGTSASFALRFGQTIFSAASLIFMCFDFDFYDFTTFCYLAMVMAIVTPWSILL 60
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVT-ILFERDVHFCRMYP 119
A D YS+ K ++S+ GD+V + LS T +L D C
Sbjct: 61 ALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICD--- 117
Query: 120 QLSCGRYELSVILAFITWSFIATSAVSMFWLLASL 154
C +Y++S LAF+ W + SA+ FW L SL
Sbjct: 118 GSLCIQYQVSAALAFLCWFLLLASALFNFWSLPSL 152
>AT1G49405.1 | chr1:18284335-18284947 REVERSE LENGTH=153
Length = 152
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60
M +V GS GT + +SLR+ Q V A S++ M F +TAFCYL+ M L + W+ L
Sbjct: 1 MVEVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTL 60
Query: 61 ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMYPQ 120
A +DIY + ++ P ++ +GDWV ++L+ V + + C P
Sbjct: 61 AMVDIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDILRSNESSC---PP 117
Query: 121 LSCGRYELSVILAF 134
C RY+ + LAF
Sbjct: 118 TICNRYQFAATLAF 131
>AT4G37235.1 | chr4:17518052-17519671 FORWARD LENGTH=153
Length = 152
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 1 MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMA--SAYGFSNYTAFCYLIASMGLQLLWSF 58
M S GT S LR+ Q +F+ AS++ M F YT FCYL+ MGL WS
Sbjct: 1 MVRTTASFGTSSSFVLRLGQTLFSSASLLFMCFNDDEDFYAYTTFCYLVTVMGLVTPWSV 60
Query: 59 GLACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFXXXXXXXGVTILFERDVHFCRMY 118
LA ++ YS+ K+ ++S+ V GD+V + LS V +L
Sbjct: 61 TLALMEAYSILVKKLPMQATVISVIVAGDFVLSFLSLGGACSTASVAVLLMDA------- 113
Query: 119 PQLSCGRYELSVILAFITWSFIATSAVSMFWLLASL 154
+ C RY+LS +AF++ S F LL SL
Sbjct: 114 GEKQCDRYKLSATMAFLSSFLSFASTFFNFCLLPSL 149
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,931,608
Number of extensions: 91882
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 8
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 107 (45.8 bits)