BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0135100 Os09g0135100|Os09g0135100
         (404 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27530.1  | chr3:10193778-10199659 REVERSE LENGTH=915           79   6e-15

>AT3G27530.1 | chr3:10193778-10199659 REVERSE LENGTH=915
          Length = 914

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 26/98 (26%)

Query: 322 KGIGGFVFGNERSESKEDSYVERFLDCISNGTIPDDSR---------------------- 359
           KG+ G VFG+ +S S EDSY++R LD ISNGT+PDD R                      
Sbjct: 8   KGVVGMVFGDNQS-SNEDSYIQRLLDRISNGTLPDDRRTAIVELQSVVAESNAAQLAFGA 66

Query: 360 ---PVLLNVLKEDHEDAELVRGALETFVSAVTPIETSK 394
              PV++ +LK+  +D E+VRGALET + A+TPI+ ++
Sbjct: 67  AGFPVIVGILKDQRDDLEMVRGALETLLGALTPIDHAR 104



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,214,018
Number of extensions: 332608
Number of successful extensions: 1031
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,337,553
Effective search space: 2526278559
Effective search space used: 2526278559
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 113 (48.1 bits)