BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0124100 Os09g0124100|J023138I09
         (164 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04710.1  | chr3:1278229-1280942 FORWARD LENGTH=457             88   2e-18
AT2G03430.1  | chr2:1036192-1037536 REVERSE LENGTH=241             49   9e-07

>AT3G04710.1 | chr3:1278229-1280942 FORWARD LENGTH=457
          Length = 456

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 8/140 (5%)

Query: 8   TPLFLSSIHGRAAATRYLLDHGSNP--AIDKIVLPLHGAAVKGHCEIVELFLSKGVDVDL 65
           TPL  ++ H +  A   LL+H +NP    +  + PL  A   G    +EL +  G   ++
Sbjct: 156 TPLIWAAGHDQKNAVEVLLEHNANPNAETEDNITPLLSAVAAGSLSCLELLVKAGAKANV 215

Query: 66  YSIAGTPLLAAAISGQHSTMKILLEHHADFN------TTPIEVAANHGRRDIVEMLFPLT 119
           ++   TPL  AA  G    +  LL+  AD N        P+EVAA    R +VE+LFPLT
Sbjct: 216 FAGGATPLHIAADIGNLELINCLLKAGADPNQKDEEGNRPLEVAAARDNRKVVEILFPLT 275

Query: 120 SPISTLSDWSIDGIISHVEN 139
           +   T+SDW++DGI++H+E+
Sbjct: 276 TKPETVSDWTVDGILAHMES 295



>AT2G03430.1 | chr2:1036192-1037536 REVERSE LENGTH=241
          Length = 240

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 31  NPAIDKIVLPLHGAAVKGHCEIVELFLSKGVDVDLYSIAG-TPLLAAAISGQHSTMKILL 89
           N   D+   PLH AA  G+ E+VE+ L++G DV+  +  G T L  AA  G+    ++LL
Sbjct: 77  NSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAASKGRLEIAQLLL 136

Query: 90  EHHADFN------TTPIEVAANHGRRDIVEMLFPLTSPI 122
            H A  N       TP+  AA+ G+ ++ E L    + I
Sbjct: 137 THGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGAEI 175



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,579,764
Number of extensions: 139694
Number of successful extensions: 599
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 3
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)