BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0103700 Os09g0103700|AK071092
         (377 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28910.1  | chr2:12415992-12416990 REVERSE LENGTH=333          164   5e-41

>AT2G28910.1 | chr2:12415992-12416990 REVERSE LENGTH=333
          Length = 332

 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 85/130 (65%), Gaps = 25/130 (19%)

Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPENNKHQXXXXXXXXXXXXXXX 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAP + +                 
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPTSKEEPKTTQQKTEDPENS-- 58

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXYTSFQGLLALARITGSNSDETRGACRKCGRVGHLTFQ 120
                                  Y SFQGLLALARITGSN+DE RG+C+KCGRVGHLTFQ
Sbjct: 59  -----------------------YASFQGLLALARITGSNNDEARGSCKKCGRVGHLTFQ 95

Query: 121 CRNFLSVKED 130
           CRNFLS KED
Sbjct: 96  CRNFLSTKED 105



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,571,018
Number of extensions: 91587
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 277
Effective length of database: 8,364,969
Effective search space: 2317096413
Effective search space used: 2317096413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)