BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0567100 Os08g0567100|AK072895
(293 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23350.1 | chr3:8354104-8355201 FORWARD LENGTH=282 94 7e-20
AT3G46540.1 | chr3:17134204-17135411 REVERSE LENGTH=308 76 3e-14
AT3G59290.1 | chr3:21912796-21917474 FORWARD LENGTH=1025 61 5e-10
AT1G08670.1 | chr1:2760419-2761551 REVERSE LENGTH=232 58 7e-09
AT2G43160.3 | chr2:17948884-17953267 FORWARD LENGTH=896 54 8e-08
AT5G11710.1 | chr5:3772981-3776316 FORWARD LENGTH=561 54 8e-08
>AT3G23350.1 | chr3:8354104-8355201 FORWARD LENGTH=282
Length = 281
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 3 DYWRIAGVLRRRMAR-AGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLRG 61
+YWRI VL R++ + + K WR YKA+V+LEFLL HGP +P DFL D+ R L
Sbjct: 66 EYWRIVDVLHRKIGKDEREIKNWREAYKAMVLLEFLLMHGPIHLPHDFLYDLDHFRFLST 125
Query: 62 FTHVDDRGFDWGACMQRRCDSVLSLLTDAE 91
F +VD+ GFDWGA +Q++ D + +LL E
Sbjct: 126 FQYVDNNGFDWGAQVQKKADQIQTLLLGKE 155
>AT3G46540.1 | chr3:17134204-17135411 REVERSE LENGTH=308
Length = 307
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 1 MDDYWRIAGVLRRRMARAGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLR 60
+DY I VL +R+A+ D + WR Y +L+V+E LLTHGP+ V +F D+ + ++
Sbjct: 76 FEDYLAIVEVLHKRLAKF-DKRNWRMAYNSLIVVEHLLTHGPESVSDEFQGDIDVISQMQ 134
Query: 61 GFTHVDDRGFDWGACMQRRCDSV 83
F +D++GF+WG ++++ + V
Sbjct: 135 TFQQIDEKGFNWGLAVRKKAEKV 157
>AT3G59290.1 | chr3:21912796-21917474 FORWARD LENGTH=1025
Length = 1024
Score = 61.2 bits (147), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 3 DYWRIAGVLRRRMARAGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLRGF 62
+Y GVL +R++ +G K WR VYKAL VLE+++ HG + V + + L GF
Sbjct: 58 EYQITMGVLWKRLSDSG--KNWRHVYKALTVLEYMVGHGSERVIEEVKEHAYQITTLSGF 115
Query: 63 THVDDRGFDWGACMQRRCDSVLSLLTDAE 91
++D G D G+ ++++ S+++L+ D E
Sbjct: 116 QYIDSSGKDQGSNVRKKAQSLVALVNDKE 144
>AT1G08670.1 | chr1:2760419-2761551 REVERSE LENGTH=232
Length = 231
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 MDDYWRIAGVLRRRMARAGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLR 60
+D + RI +LR+RM D KEWR + L +L LL +GP V +F + A + D
Sbjct: 68 VDQFQRIVKILRQRMV-VFDRKEWRGMCNTLSMLNHLLLNGPLSVFSEFQHERAIIEDAI 126
Query: 61 GFTHVDDRGFDWGACMQRRCDSVLSLLTD 89
+D+RGFD G ++ + VL LL D
Sbjct: 127 KMEWIDERGFDCGLKVRNIAEKVLRLLED 155
>AT2G43160.3 | chr2:17948884-17953267 FORWARD LENGTH=896
Length = 895
Score = 54.3 bits (129), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 3 DYWRIAGVLRRRMARAGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLRGF 62
+Y I V+ +R++ G K WR VYKAL VLE+++ HG + V + + L F
Sbjct: 58 EYQLIMVVIWKRLSDTG--KNWRHVYKALTVLEYMVGHGSERVIDEIRERAYQISTLSDF 115
Query: 63 THVDDRGFDWGACMQRRCDSVLSLLTDAE 91
++D G D G+ ++++ S+++L+ D E
Sbjct: 116 QYIDSGGRDQGSNVRKKSQSLVALVNDKE 144
>AT5G11710.1 | chr5:3772981-3776316 FORWARD LENGTH=561
Length = 560
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 7 IAGVLRRRMARAGDWKEWRPVYKALVVLEFLLTHGPDEVPRDFLPDVAALRDLRGFTHVD 66
+ VL R++ G K+WR VYKAL V+++L+++G + + + + L F +V+
Sbjct: 64 VMSVLWTRLSETG--KDWRYVYKALAVIDYLISNGSERAVDEIIEHTYQISSLTSFEYVE 121
Query: 67 DRGFDWGACMQRRCDSVLSLLTDAE 91
G D G ++++ +++++LL + E
Sbjct: 122 PNGKDVGINVRKKAENIVALLNNKE 146
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.134 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,947,012
Number of extensions: 155394
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 6
Length of query: 293
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,419,801
Effective search space: 1641861195
Effective search space used: 1641861195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)