BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0567000 Os08g0567000|AK065186
         (370 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24160.1  | chr3:8726241-8729023 FORWARD LENGTH=365            216   2e-56

>AT3G24160.1 | chr3:8726241-8729023 FORWARD LENGTH=365
          Length = 364

 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 206/345 (59%), Gaps = 18/345 (5%)

Query: 37  FVDAASRRYLRDQQHHDQAASMSLDQVSAAVSVLLGFXXXXXXXXXXXXKLDKLLLPNPF 96
           F+D ++ +YLR  +   +A  MS  ++SAAVS LLGF            KL+K+L PNPF
Sbjct: 27  FIDGSNNQYLR-PRSSSEALPMSPVEISAAVSALLGFAPSATLTADGSSKLNKILKPNPF 85

Query: 97  DRPRAVFLLQIDGFH-ASVESITSEA--GSIFKTTIDGLSDSATGLTDKDDLVIVHSDES 153
           +RPRA F+L+I G     +E+  S +  G+  +++I   SDS    T+  D  +V    +
Sbjct: 86  ERPRAAFVLEIAGADDMLLETSPSHSFLGNAIRSSIK--SDSYKADTELPDNEVVVVSVN 143

Query: 154 PAVDSGSEYFDSDLTDLANWLGGSY----EKVDGKLIIPLESGESLTLLITKEADMEFAS 209
                 S+  D D+ D A+WLGGSY    E   G L IPL  G ++   + KEA+ +FA 
Sbjct: 144 EPS---SDVTDKDINDFASWLGGSYVAGAEPSSGLLSIPLAGGANVEFNLEKEAERKFAL 200

Query: 210 SLISLRKTIKRGIQVHEDFSGGVMSPAELLVCHFKGIKALEEEYGSTEIVKQGTDVVRTA 269
           +L+ L + I++ + V++D S G+   AEL V  F GI AL +EYG   + KQG DV+ + 
Sbjct: 201 NLLGLYQNIRQAVSVYDDLSHGIDRTAELTVGRFGGIDALAQEYGQG-MAKQGMDVLLST 259

Query: 270 VTKAFDLLRGAYNGKIVGLVI---STKEASPSLVGPASSLHISRWLKETSQ-TNTTIASS 325
           ++K F+LL  ++ G+IVG+++      + S +L+   SS   +R + E     +  I + 
Sbjct: 260 LSKLFNLLETSHKGQIVGVIVLDERVNQESENLLNFGSSRSSARSMVEVEGIPSAAIIAE 319

Query: 326 EILVRKSLAWITGIILLVSTLIGVCLLMNMPLTRDTLLYSNVKID 370
            ILVR +LAW+TGIILL++T++GV  LMNMPLT+DTLLYSNVK+D
Sbjct: 320 VILVRLTLAWLTGIILLIATILGVYFLMNMPLTKDTLLYSNVKLD 364



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,485,046
Number of extensions: 256194
Number of successful extensions: 732
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,364,969
Effective search space: 2258541630
Effective search space used: 2258541630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)