BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0566000 Os08g0566000|AK067576
(609 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G32470.1 | chr5:12085328-12088569 REVERSE LENGTH=618 615 e-176
>AT5G32470.1 | chr5:12085328-12088569 REVERSE LENGTH=618
Length = 617
Score = 615 bits (1585), Expect = e-176, Method: Compositional matrix adjust.
Identities = 322/536 (60%), Positives = 413/536 (77%), Gaps = 8/536 (1%)
Query: 75 YTPFLVSLAAGALRLDSFRQYIAQDAYFLHAFARAYEMAEECAXXXXXKATIVVLRKAIL 134
Y+PF V LAAG L++D+FRQYIAQD +FL AFA AYE+A +CA K I LRK+++
Sbjct: 83 YSPFAVCLAAGNLKIDTFRQYIAQDVHFLKAFAHAYELAADCADDDDDKLAISDLRKSVM 142
Query: 135 RELNLHASVLQEWGVDPNKEIPPIPATTKYTDFLLATSTGKVDGGKGSDKMVTPFEKTKI 194
EL +H S +Q+W +D NKE+ AT +YT+FLLAT++GKV+G K + TPFEKTK+
Sbjct: 143 EELKMHDSFVQDWDLDINKEVSVNSATLRYTEFLLATASGKVEGCKAPGMLDTPFEKTKV 202
Query: 195 AAYTVGAMTPCMRLYAYLGKELAVFLK-QDENHPYKKWIETYASSDFENNALQIEELLDK 253
AAYT+GA+TPCMRLYA+LGKE L D NHPYKKWI+ Y+S F+ +A Q E+LL+K
Sbjct: 203 AAYTLGAVTPCMRLYAFLGKEFGSLLDLSDVNHPYKKWIDNYSSDAFQASAKQTEDLLEK 262
Query: 254 LSVSLTGEELEIIGKLYQQAMRLEVEFFSAQPVDQPVVAPLSRYCGPKDKLLIFCDFDLT 313
LSVS+TGEEL+II KLYQQAM+LEVEFF AQP+ QP + PL + KD L+IF DFDLT
Sbjct: 263 LSVSMTGEELDIIEKLYQQAMKLEVEFFHAQPLAQPTIVPLLKN-HSKDDLVIFSDFDLT 321
Query: 314 CTVVDSSAILAEIAILSHQKASQGGADSSLDRTKSADLRNSWNMLSNQYMEEYEQCIASL 373
CTVVDSSAILAEIAI++ K Q + + R S+DL+N+WN+LS QY E YE+CI S+
Sbjct: 322 CTVVDSSAILAEIAIVTAPKDEQSRSGQQIHRMLSSDLKNTWNLLSKQYTEHYEECIESI 381
Query: 374 LPPEEARSLDYDQLYKGLEVLSQFEKLANSRVVDSGVLRGMNLDDIRKAGERLILQDGCK 433
L ++A DY+ L K LE LS FEK AN+RV++SGVL+G+NL+DI++AGERLILQDGC
Sbjct: 382 LNKKKADKFDYEGLCKALEQLSDFEKEANNRVIESGVLKGLNLEDIKRAGERLILQDGCI 441
Query: 434 IFFQKIGKTRENLNLDVHILSYCWCADLIRSAFSSVGCLDGLNIHSNEFAFEGSVSTGHI 493
FQKI KT ENLN ++H+LSYCWC DLIR+AFS+ G +D + +H+NEF FE S+STG I
Sbjct: 442 NVFQKILKT-ENLNAELHVLSYCWCGDLIRAAFSA-GGVDAVEVHANEFTFEESISTGEI 499
Query: 494 NRQMESPLDKAEKFKSI---KSDVGSTGTLLSVYIGDSVGDLLCLLEADIGIVVGSSTTL 550
R++ESP++KA++FKSI + + + + LSVYIGDSVGDLLCLLEADIGIVV SS++L
Sbjct: 500 ERKVESPINKAQQFKSILQNRKNENNKKSFLSVYIGDSVGDLLCLLEADIGIVVSSSSSL 559
Query: 551 RRVGKQFGVSFVPLFTGLVEKQRR-IEKEESSIFKARSGILYTVSSWSEVQAFILG 605
RRVG FGVSFVPLF+G+V+KQ++ E+ SS +K SG LYTVSSW+E+ +F LG
Sbjct: 560 RRVGSHFGVSFVPLFSGIVQKQKQHTEESSSSAWKGLSGTLYTVSSWAEIHSFALG 615
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,181,485
Number of extensions: 495138
Number of successful extensions: 1235
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1229
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 505
Effective length of database: 8,255,305
Effective search space: 4168929025
Effective search space used: 4168929025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)