BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0562600 Os08g0562600|AK064971
(291 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23950.1 | chr5:8082789-8083448 FORWARD LENGTH=220 158 3e-39
AT1G07310.1 | chr1:2247775-2248833 REVERSE LENGTH=353 119 2e-27
AT4G01200.1 | chr4:506783-507535 REVERSE LENGTH=251 59 3e-09
AT2G33320.1 | chr2:14119526-14121334 REVERSE LENGTH=603 57 1e-08
AT3G04360.1 | chr3:1157025-1158200 REVERSE LENGTH=392 56 2e-08
AT1G04540.1 | chr1:1237256-1239061 FORWARD LENGTH=602 55 6e-08
AT2G13350.1 | chr2:5536525-5537730 REVERSE LENGTH=402 52 3e-07
AT1G09070.1 | chr1:2927767-2928741 FORWARD LENGTH=325 48 5e-06
>AT5G23950.1 | chr5:8082789-8083448 FORWARD LENGTH=220
Length = 219
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 6 EVEVTVSSARDLKNVNWRNGDLKPYAVLWVDDGAKCSTRVDLDNADNPNWDDKLTLPLPP 65
EVEVT+SSA+D+KNVNWRNG KPYAV+W+D K STRVD D W++ + LPP
Sbjct: 7 EVEVTISSAKDIKNVNWRNGPNKPYAVVWIDPKFKSSTRVDEDGNTCTTWNETFVIALPP 66
Query: 66 SSRLDDALLYLDVVHANAAEGVKPLVGSARLPLRDVLDDAGVGARVSRSLRLKRPSGRPQ 125
++ DD +Y+++VHA E KPL+GSA L LRDV+DD G G ++L+LKRPSGRPQ
Sbjct: 67 AND-DDDKVYINIVHAGREENTKPLIGSAHLSLRDVIDDVGFGVPFMKTLKLKRPSGRPQ 125
Query: 126 GRLDLRLAVRESARYYDPSPYPAPYGQPAGTR 157
G+LD+ + VRE+ PY PY G++
Sbjct: 126 GKLDVTVTVRETPGSNYALPYGDPYAPEKGSK 157
>AT1G07310.1 | chr1:2247775-2248833 REVERSE LENGTH=353
Length = 352
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 90/129 (69%), Gaps = 3/129 (2%)
Query: 9 VTVSSARDLKNVNWRNGDLKPYAVLWVDDGAKCSTRVDLDNADNPNWDDKLTLPLPPSSR 68
VTV SA+ LKNVNWRNGDLKPY VL++D STR D ++ P W++++TLPL +
Sbjct: 11 VTVVSAKHLKNVNWRNGDLKPYVVLYLDQDHPLSTRSDDSSSIKPVWNERITLPL--TRS 68
Query: 69 LDDALLYLDVVHANAAEGVKPLVGSARLPLRDVLD-DAGVGARVSRSLRLKRPSGRPQGR 127
+ +++L ++V H+N+++ K LVGS R PL ++D D + + SL L RPSGRPQG+
Sbjct: 69 VHESVLNIEVFHSNSSDLAKTLVGSVRFPLARLIDSDGSMIPELINSLELVRPSGRPQGK 128
Query: 128 LDLRLAVRE 136
+ L+LA+++
Sbjct: 129 IRLKLAIKD 137
>AT4G01200.1 | chr4:506783-507535 REVERSE LENGTH=251
Length = 250
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 23/152 (15%)
Query: 7 VEVTVSSARDLKNVNWRNGDLKPYAVLWVDDGAKCSTRVDLDNADNPNWDDKLTLPLPP- 65
+E+ + SA+ LK + L+ YA +WVD +K TR+D ++NP W+DK + P
Sbjct: 7 LEINLISAQGLKEPTGKLRRLQTYASVWVDSSSKLRTRIDRIGSENPIWNDKFVFQVSPE 66
Query: 66 --SSRLDDALLYLDVV-----HANAAEGVKPLVGSARLPLRDVLDDAGVGARVSRSLRLK 118
SS + + V H L+G+ R + + L A V +L+++
Sbjct: 67 FLSSETSGVSIEIYAVGYLRDH---------LIGTVRFLVSNFLPTAAVKVPSLVALQIR 117
Query: 119 RPSGRPQGRLDLRLAVRESARYYDPSPYPAPY 150
RPSG+ G L++ +A D S PA +
Sbjct: 118 RPSGKFHGVLNI------AAMVMDASELPADF 143
>AT2G33320.1 | chr2:14119526-14121334 REVERSE LENGTH=603
Length = 602
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 28/147 (19%)
Query: 7 VEVTVSSARDLKNVNWRNGDLKPYAVLWVDDGAKCSTRVDLDNADNPNWDDKLTLPLPPS 66
+E+ + SA+DL V+ + +K YAV WV K +TRVD NP W+DK
Sbjct: 10 LELNIISAQDLAPVSRK---MKTYAVAWVHSERKLTTRVDYTGGGNPTWNDKFVF----- 61
Query: 67 SRLDDALLYLD----VVHANAAEGVKPL-VGSARLPLRDVL-DDAGVGARVSR------- 113
R+ + LY D VV A + + VG+ R+ + +++ + G R +
Sbjct: 62 -RVSEDFLYADTSAVVVEIYALHWFRDVHVGTVRVLISNLIPPNRRPGYRSNEEYRRTPP 120
Query: 114 ------SLRLKRPSGRPQGRLDLRLAV 134
+L+++RPSGRPQG L++ + +
Sbjct: 121 PGMRFVALQVRRPSGRPQGILNIGVGI 147
>AT3G04360.1 | chr3:1157025-1158200 REVERSE LENGTH=392
Length = 391
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 27/170 (15%)
Query: 7 VEVTVSSARDLKNVNWRNGDLKPYAVLWV--DDGAKCSTRVDLDNADNPNWDDKLTLPLP 64
+E+ + SA+DL V+ RN +K Y+V W+ D K +TRVD N NP W++K
Sbjct: 11 LEINLISAQDLAPVS-RN--MKTYSVAWINTDPMRKLTTRVDQSNRANPIWNEKFVF--- 64
Query: 65 PSSRLDDALLYLD----VVHANAAEGVK-PLVGSARLPLRDVLDD-AGVGARVSR----- 113
R++D +LY+D V+ AA K LVG+ + L D+ +G G
Sbjct: 65 ---RVNDKILYVDASAIVIEIYAAAWAKDALVGTVNVLLSDLFAPWSGFGDGNDGGGGNN 121
Query: 114 -----SLRLKRPSGRPQGRLDLRLAVRESARYYDPSPYPAPYGQPAGTRD 158
+L+++RPSGR QG L L +A+ + + P G G R+
Sbjct: 122 NMRLVTLQIRRPSGRLQGFLRLGVALLDGGQRSMPLSIEVFDGSRKGERN 171
>AT1G04540.1 | chr1:1237256-1239061 FORWARD LENGTH=602
Length = 601
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 29/144 (20%)
Query: 7 VEVTVSSARDLKNVNWRNGDLKPYAVLWVDDGAKCSTRVDLDNADNPNWDDKLTLPLPPS 66
+E+ + SA+DL V + K YAV WV K +TRVD + NP W+DK
Sbjct: 11 LELNIISAQDLAPVARKT---KTYAVAWVHSERKLTTRVDYNGGTNPTWNDKFVF----- 62
Query: 67 SRLDDALLYLD----VVHANAAEGVKPL-VGSARLPLRDVL-DDAGVGARVSR------- 113
R+++ LY D V+ A + + VG+ R+ + +++ + G R S
Sbjct: 63 -RVNEEFLYADTSAVVIEIYALHWFRDVHVGTVRVLISNLIPPNRRPGYRTSNNEYRRTP 121
Query: 114 -------SLRLKRPSGRPQGRLDL 130
+L+++R SGRPQG L++
Sbjct: 122 PPGMRFVALQVRRTSGRPQGILNI 145
>AT2G13350.1 | chr2:5536525-5537730 REVERSE LENGTH=402
Length = 401
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 7 VEVTVSSARDLKNVNWRNGDLKPYAVLWVDDGAKCSTRVDLDNADNPNWDDKLTLPLPPS 66
+E+ + SA++L V +K YA+ W+D K +TRVD +P W+DK
Sbjct: 10 LELNIISAQELAPVAR---CMKTYAIAWIDPERKLTTRVDNTGGTSPTWNDKFVF----- 61
Query: 67 SRLDDALLY----LDVVHANAAEGVKPL-VGSARLPLRDVLDDAGVGARVSRSLRLKRPS 121
RLD+ LY + V+ A K + VG+ + + D++ + V +L + R S
Sbjct: 62 -RLDEEALYDATSIVVIEIYALHWFKDIHVGTVQALISDLVSPSSAMRFV--TLEVLRAS 118
Query: 122 GRPQGRLDLRLAV 134
GRP G L++ + +
Sbjct: 119 GRPHGLLNIAVGL 131
>AT1G09070.1 | chr1:2927767-2928741 FORWARD LENGTH=325
Length = 324
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 7 VEVTVSSARDLKNVNWRNGDLKPYAVLWVDDGA--KCSTRVDLDNADNPNWDDKLTLPLP 64
+++T+ SA DLK+V G YAV+ ++ A K T+VD D P W ++ L +
Sbjct: 6 LDLTIISAEDLKDVQLI-GKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWKHQMKLTVD 64
Query: 65 PSSRLDDAL-LYLDVVHANAAEGVKPLVGSARLPLRDVLDDAGVGARVSRSLRLKRPSGR 123
++ D+ L L ++V G KP VG +P++++LD + + ++ P+G+
Sbjct: 65 DAAARDNRLTLVFEIVADRPIAGDKP-VGEVSVPVKELLDQNKGDEEKTVTYAVRLPNGK 123
Query: 124 PQGRLDLRLAVRESARY 140
+G L E Y
Sbjct: 124 AKGSLKFSFKFGEKYTY 140
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,086,965
Number of extensions: 159866
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 8
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)