BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0558100 Os08g0558100|AK065151
(253 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27480.1 | chr2:11746811-11747885 FORWARD LENGTH=229 197 5e-51
AT5G04170.1 | chr5:1145579-1147519 FORWARD LENGTH=355 192 1e-49
AT3G10300.3 | chr3:3186436-3188071 FORWARD LENGTH=336 191 4e-49
AT4G37010.2 | chr4:17444315-17445380 FORWARD LENGTH=172 54 1e-07
AT3G50360.1 | chr3:18674421-18675502 FORWARD LENGTH=170 48 4e-06
AT4G12860.1 | chr4:7538444-7538902 REVERSE LENGTH=153 47 9e-06
>AT2G27480.1 | chr2:11746811-11747885 FORWARD LENGTH=229
Length = 228
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 75 VFPPGTHPDVERAFRAVDRDGSGSIDERELQDALS-SAYHRFSIRTVRLLLFLFNKPASH 133
+F P THP++ R+F + DR+ SG ++E EL+ ALS S Y S RT+RLLLF++ P
Sbjct: 48 MFSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVD- 106
Query: 134 SPSRMGPAEFVSLWNCLGQWRGIFDRYDRDGSGKIEKDELREALRSLGYAVPPSVLELLI 193
S R+GP E+V LWNCL QWR IF+RYDRD SGK+ +LR+A +LG +P SV +L++
Sbjct: 107 SLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNLGCVLPTSVHQLIV 166
Query: 194 ANYNNGVSSRGALDFDNFVECGMIVKGLTEKFKEKDTRYSGSATLSYDGFLSMVIPFIV 252
+ +++G L FD+F+ECGMIVKGLTEKF+E D Y+G ATLSYD F+ MVIPFI
Sbjct: 167 SQFDDGTGKTVDLCFDSFLECGMIVKGLTEKFRENDPGYTGYATLSYDVFMLMVIPFIA 225
>AT5G04170.1 | chr5:1145579-1147519 FORWARD LENGTH=355
Length = 354
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 129/177 (72%), Gaps = 3/177 (1%)
Query: 76 FPPGTHPDVERAFRAVDRDGSGSIDERELQDALSSAYHRFSIRTVRLLLFLFNKPASHSP 135
F PGT P++ F+A D+DGSG ID++ELQ ALSS RFS+RTV LL++LF +
Sbjct: 180 FAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSNAM-- 237
Query: 136 SRMGPAEFVSLWNCLGQWRGIFDRYDRDGSGKIEKDELREALRSLGYAVPPSVLELLIAN 195
++GP EF +L+ L WR IF+R D+D SG+I+ +ELR+AL SLG++V P VL+LL++
Sbjct: 238 -KIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSLGFSVSPVVLDLLVSK 296
Query: 196 YNNGVSSRGALDFDNFVECGMIVKGLTEKFKEKDTRYSGSATLSYDGFLSMVIPFIV 252
++ A+++DNF+EC + VKGLTEKFKEKDT YSGSAT +Y+ F+ V+PF++
Sbjct: 297 FDKSGGKNRAIEYDNFIECCLTVKGLTEKFKEKDTAYSGSATFNYESFMLTVLPFLI 353
>AT3G10300.3 | chr3:3186436-3188071 FORWARD LENGTH=336
Length = 335
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 128/178 (71%), Gaps = 3/178 (1%)
Query: 75 VFPPGTHPDVERAFRAVDRDGSGSIDERELQDALSSAYHRFSIRTVRLLLFLFNKPASHS 134
FPPGT P++ F+A DRD SG ID++ELQ ALSS FSIRTV LL++LF + +
Sbjct: 160 AFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFT---NSN 216
Query: 135 PSRMGPAEFVSLWNCLGQWRGIFDRYDRDGSGKIEKDELREALRSLGYAVPPSVLELLIA 194
++GP EF SL+ L WR IF+R+D+D SG+I+ +ELR+AL SLG++V P +L+LL++
Sbjct: 217 VRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLGFSVSPVILDLLVS 276
Query: 195 NYNNGVSSRGALDFDNFVECGMIVKGLTEKFKEKDTRYSGSATLSYDGFLSMVIPFIV 252
++ A+++DNF+EC + VKGLTEKFKEKDT SGSA +Y+ F+ V+PF+V
Sbjct: 277 KFDKSGGRNRAIEYDNFIECCLTVKGLTEKFKEKDTALSGSAIFNYENFMLTVLPFLV 334
>AT4G37010.2 | chr4:17444315-17445380 FORWARD LENGTH=172
Length = 171
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 152 QWRGIFDRYDRDGSGKIEKDELREALRSLGYAVPPSVLELLIANYNNGVSSRGALDFDNF 211
+ R IFD +D DGSG I+ EL A+RSLG+ + + L+A + S GA+DFD F
Sbjct: 31 EIREIFDLFDIDGSGSIDASELNVAMRSLGFEMNNQQINELMAEVDKNQS--GAIDFDEF 88
Query: 212 VECGMIVKGLTEKFKEKDT 230
V +T KF E+D+
Sbjct: 89 VHM------MTTKFGERDS 101
>AT3G50360.1 | chr3:18674421-18675502 FORWARD LENGTH=170
Length = 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 152 QWRGIFDRYDRDGSGKIEKDELREALRSLGYAVPPSVLELLIANYNNGVSSRGALDFDNF 211
+ + F+ +D DGSG I+ EL A+R+LG+ + + +IA+ + S GA+DFD F
Sbjct: 27 EIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGS--GAIDFDEF 84
Query: 212 VECGMIVKGLTEKFKEKDTR 231
V +T K E+DT+
Sbjct: 85 VHM------MTAKIGERDTK 98
>AT4G12860.1 | chr4:7538444-7538902 REVERSE LENGTH=153
Length = 152
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 151 GQWRGIFDRYDRDGSGKIEKDELREALRSLGYAVPPSVLELLIANYNNGVSSRGALDFDN 210
G+ +F +D++G GKI K+EL++ +S+G VP + + +IA + V+ GA+D D
Sbjct: 4 GELSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMD--VNGDGAMDIDE 61
Query: 211 F 211
F
Sbjct: 62 F 62
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,885,636
Number of extensions: 181277
Number of successful extensions: 800
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 6
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)