BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0553500 Os08g0553500|Os08g0553500
(238 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17080.1 | chr2:7433326-7434117 REVERSE LENGTH=264 82 2e-16
AT2G17070.1 | chr2:7430863-7431654 REVERSE LENGTH=264 77 7e-15
AT4G35200.1 | chr4:16749142-16749903 REVERSE LENGTH=254 71 6e-13
AT4G35210.1 | chr4:16751428-16752180 FORWARD LENGTH=251 68 5e-12
AT1G76210.1 | chr1:28595202-28595882 REVERSE LENGTH=227 67 7e-12
>AT2G17080.1 | chr2:7433326-7434117 REVERSE LENGTH=264
Length = 263
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 122/266 (45%), Gaps = 35/266 (13%)
Query: 1 MAFHLXXXXXXXXXXXXKTDVEEQLQSLEEIVSSPSATIETMCNGFRRLTDVYSCMDEMM 60
++FH+ V+EQL L + S++ ++C L +++ +D+++
Sbjct: 3 VSFHVRSNSFPSRSHPQAAHVDEQLARLRSSEQASSSSSSSICQRLDNLQELHESLDKLI 62
Query: 61 CLPSFRL-----QQRRAVEQELERSLALLDLCNAMQESFSELKASTQEMQ--LAIKRGDD 113
P + ++AVEQ L+ SL +LDLCN +++ SE+K E+Q L KRGD
Sbjct: 63 SRPVTQQALSQEHNKKAVEQLLDGSLRILDLCNISKDALSEMKEGLMEIQSILRRKRGD- 121
Query: 114 AAVQSKVQAY--TRLTXXXXXXXXXXXXXXXXEDQEGCRVVKLLADAREIALSVLESTLH 171
+ +V+ Y +R + + + + +A I LS+ +S L
Sbjct: 122 --LSEEVKKYLTSRKSLKKSFQKVQKSLKVTQAEDNNDDTLAVFGEAEAITLSLFDSLLS 179
Query: 172 LLSKQIAMPSQSKWSLVSKAFQKTRVTCQEEQ--------------------LQALELDI 211
+S + SKWS+VSK K +VTC+ ++ +Q LE I
Sbjct: 180 YMS---GSKTCSKWSVVSKLMNKKKVTCEAQENEFTKVDSEFQSEKTLKMDDVQNLESCI 236
Query: 212 VDLESGVETLFRRLIQSRVSLLNALS 237
DLE G+E+L + LI+ RVS LN L
Sbjct: 237 QDLEDGLESLSKSLIKYRVSFLNILG 262
>AT2G17070.1 | chr2:7430863-7431654 REVERSE LENGTH=264
Length = 263
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 120/264 (45%), Gaps = 31/264 (11%)
Query: 1 MAFHLXXXXXXXXXXXXKTDVEEQLQSLEEIVSSPSATIETMCNGFRRLTDVYSCMDEMM 60
++FH+ V+EQL L + +++ ++C L +++ +D+++
Sbjct: 3 VSFHVRSHSYPSIPHPQAAHVDEQLARLRSSEETSTSSSSSICQRLDNLQELHESLDKLI 62
Query: 61 CLPSFRL-----QQRRAVEQELERSLALLDLCNAMQESFSELKASTQEMQ--LAIKRGDD 113
LP + + ++ VEQ L+ SL +LD+CN +++ S++K E+Q L KRGD
Sbjct: 63 RLPVTQQALGQEKNKKDVEQLLDGSLKILDVCNISKDALSQMKEGLMEIQSILRRKRGDL 122
Query: 114 AAVQSKVQAYTRLTXXXXXXXXXXXXXXXXEDQEGCRVVKLLADAREIALSVLESTLHLL 173
+ K A + ED + + + + +A + +++ +S +
Sbjct: 123 SGEVKKYLASRKSFKKTFQKVQKSLKAAQAEDNKD-KSLAVFGEAEAVTIAMFDSLFSYM 181
Query: 174 SKQIAMPSQSKWSLVSKAFQKTRVTCQE--------------------EQLQALELDIVD 213
S + SKWS+VSK K ++TC+ E +Q LE I D
Sbjct: 182 S---GSKTCSKWSVVSKLMNKKKITCEAQENEFTKVDSEFQSEKTLKMEDVQILESCIQD 238
Query: 214 LESGVETLFRRLIQSRVSLLNALS 237
E G+E+L + LI+ RVS+LN+
Sbjct: 239 FEDGLESLSKSLIKYRVSILNSFG 262
>AT4G35200.1 | chr4:16749142-16749903 REVERSE LENGTH=254
Length = 253
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 113/257 (43%), Gaps = 30/257 (11%)
Query: 1 MAFHLXXXXXXXXXXXXKTDVEEQLQSLEEIVSSPSATIETMCNGFRRLTDVYSCMDEMM 60
++FH+ V+EQL L S+ S++I C L D++ +++M+
Sbjct: 3 VSFHVRSNSYPSRQHPQAAHVDEQLTRLRSSDSASSSSI---CQRLSNLQDLHDSLEKMI 59
Query: 61 CLPSFRLQ-QRRAVEQELERSLALLDLCNAMQESFSELKASTQEMQLAIKR--GDDAAVQ 117
L L + +E+ L+ SL +LDLCN +++ S++K E+Q ++R GD +
Sbjct: 60 RLSVTNLALSQDQIEKLLDGSLRILDLCNIAKDAISQMKEGLMEIQSILRRKPGDLSGEV 119
Query: 118 SKVQAYTRLTXXXXXXXXXXXXXXXXEDQEGCRVVKLLADAREIALSVLESTLHLLSKQI 177
K + +D +V + A + +++ ES +S
Sbjct: 120 KKYLVSRKFLKKSLQKVIKSLKVCQSKDSTNASLV-VFGRAEAVTMALFESLFSFMSGSK 178
Query: 178 AMPSQSKWSLVSKAFQKTRVTC--------------------QEEQLQALELDIVDLESG 217
A KWSLVSK + +VTC Q E +Q LE I DLE G
Sbjct: 179 AC---GKWSLVSKMMSQNKVTCEAEANEFTRIDSEFQSEKSLQMEDVQNLESCIQDLEDG 235
Query: 218 VETLFRRLIQSRVSLLN 234
+E+L + LI+ RVS+LN
Sbjct: 236 IESLSKSLIKYRVSILN 252
>AT4G35210.1 | chr4:16751428-16752180 FORWARD LENGTH=251
Length = 250
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 117/257 (45%), Gaps = 33/257 (12%)
Query: 1 MAFHLXXXXXXXXXXXXKTDVEEQLQSLEEIVSSPSATIETMCNGFRRLTDVYSCMDEMM 60
++FH+ V+EQL L ++ S++I C L D++ +++M+
Sbjct: 3 VSFHVRSSSYPSRQHPQAAHVDEQLTRLRSSGTASSSSI---CQRLSNLQDLHDSLEKMI 59
Query: 61 CLP-SFRLQQRRAVEQELERSLALLDLCNAMQESFSELKASTQEMQLAI--KRGDDAAVQ 117
L + + + +E+ L+ S+ +LDLC+ ++ S++K S +E+Q + KRGD +A
Sbjct: 60 RLSVTNQALSQDQIEKLLDGSIKILDLCSISKDGLSQMKESLKEIQSIVRRKRGDLSAEV 119
Query: 118 SKVQAYTRLTXXXXXXXXXXXXXXXXEDQEGCRVVKLLADAREIALSVLESTLHLLSKQI 177
K A + ++ + + +A + +++ ES +S
Sbjct: 120 KKYLASRKFLKKSFEKVLKSLKTSQNKND----ALAVFGEAETVTIALFESLFSFMSGSK 175
Query: 178 AMPSQSKWSLVSKAFQKTRVTC--------------------QEEQLQALELDIVDLESG 217
A KWSLVSK +++ TC Q E +Q LE+ I DLE G
Sbjct: 176 AC---GKWSLVSKMMSQSKGTCEAEANEFTRVDMEFQSEKSLQMEDVQNLEICIQDLEDG 232
Query: 218 VETLFRRLIQSRVSLLN 234
+ +L + LI+ RVS+LN
Sbjct: 233 IGSLSKSLIKYRVSILN 249
>AT1G76210.1 | chr1:28595202-28595882 REVERSE LENGTH=227
Length = 226
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 45 GFRRLTDVYSCMDEMM--CLPSFR-----LQQRRAVEQELERSLALLDLCNAMQESFSEL 97
F L +++ C++ ++ C P R Q + EQ E SL +LD+CN ++ + +
Sbjct: 5 NFEGLRELHDCVNYLLHHC-PKTRESLSQQGQEKWTEQVSEASLRMLDICNVSKDVMTLV 63
Query: 98 KASTQEMQLAIKRGDDAAVQSKVQAYTRLTXXXXXXXXXXXX-XXXXEDQEG-------- 148
K S Q++QL ++ + + V K+ AY R + EG
Sbjct: 64 KHSLQDLQLTLRGNESSDVNEKIAAYNRYKNKLKKETLKCLNCLKNMKGNEGRVAMPIEQ 123
Query: 149 --CRVVKLLADAREIALSVLESTLHLLSKQIAMPSQSKWSLVS-----------KAFQKT 195
V ++L + R + ++++ES L SK SL S + +T
Sbjct: 124 NLLFVTEVLKEVRRVVVTMVESLFSLGCIPWLEKRSSKGSLSSIFSIRSSYLLDDEWDET 183
Query: 196 RVTCQEEQLQALELDIVDLESGVETLFRRLIQSRVSLLNALS 237
V +L+A E+ +V+LE +E++FRRLIQ+RVSLLN L+
Sbjct: 184 AVQSATTRLEAAEITVVELEIELESIFRRLIQTRVSLLNILT 225
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.128 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,563,931
Number of extensions: 115130
Number of successful extensions: 483
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 6
Length of query: 238
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 142
Effective length of database: 8,474,633
Effective search space: 1203397886
Effective search space used: 1203397886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)