BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0537800 Os08g0537800|AK059388
         (216 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28120.1  | chr1:9813219-9815143 REVERSE LENGTH=307            335   1e-92

>AT1G28120.1 | chr1:9813219-9815143 REVERSE LENGTH=307
          Length = 306

 Score =  335 bits (859), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 150/216 (69%), Positives = 187/216 (86%)

Query: 1   YDALRRTRGDGNCFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLGYIEFTFE 60
           Y  +RRTRGDGNCF+RSFMFSYLEHILE+QD+AEV+RI   +E+C+KTL +LGY +FTFE
Sbjct: 80  YIGIRRTRGDGNCFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFTFE 139

Query: 61  DFFSIFIDQLESVLQGHESSIGAEELLERTRDQMVSDYVVMFFRFVTSGEIQRRAEFFEP 120
           DFF++F++QL+ +LQG E SI  +EL+ R+RDQ VSDY+VMFFRFVT+G+I+ RA+FFEP
Sbjct: 140 DFFALFLEQLDDILQGTEESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEP 199

Query: 121 FISGLTNSTVVQFCKASVEPMGEESDHVHIIALSDALGVPIRVMYLDRSSCDAGNISVNH 180
           FI+GL+N+TV QFCK+SVEPMGEESDH+HI ALSDALGV IRV+YLDRSSCD+G ++VNH
Sbjct: 200 FITGLSNATVDQFCKSSVEPMGEESDHIHITALSDALGVAIRVVYLDRSSCDSGGVTVNH 259

Query: 181 HDFSPEANSSDGAAAAEKPYITLLYRPGHYDILYPK 216
           HDF P   +++    A  P+ITLLYRPGHYDILYPK
Sbjct: 260 HDFVPVGITNEKDEEASAPFITLLYRPGHYDILYPK 295



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,484,885
Number of extensions: 170206
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 122
Effective length of database: 8,529,465
Effective search space: 1040594730
Effective search space used: 1040594730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)