BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0535000 Os08g0535000|AK066324
         (112 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55600.1  | chr3:20620682-20622341 FORWARD LENGTH=241           77   2e-15
AT1G54110.1  | chr1:20199909-20201623 FORWARD LENGTH=237           76   3e-15

>AT3G55600.1 | chr3:20620682-20622341 FORWARD LENGTH=241
          Length = 240

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 45/60 (75%)

Query: 1  MVLSKVEVNLIRLLEAAPRQQNQTKLVHYVTTARELLEQLGSETTLEGISSVSKAKTSEY 60
          M +SK E+NL RLL AAP QQNQ+KL+HYV T RE LEQL  E T EG+  V+KAK +EY
Sbjct: 2  MGISKTEINLRRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTPEGLPRVTKAKVNEY 61



>AT1G54110.1 | chr1:20199909-20201623 FORWARD LENGTH=237
          Length = 236

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 44/60 (73%)

Query: 1  MVLSKVEVNLIRLLEAAPRQQNQTKLVHYVTTARELLEQLGSETTLEGISSVSKAKTSEY 60
          M + K E+N +RLL AAP QQNQ+KL+HYV T RE LEQL  E TLEG+  V+ AK +EY
Sbjct: 1  MGIGKTEINFMRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTLEGLPRVTNAKVNEY 60



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.124    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,708,044
Number of extensions: 42306
Number of successful extensions: 100
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 11,106,569
Length adjustment: 81
Effective length of query: 31
Effective length of database: 8,885,873
Effective search space: 275462063
Effective search space used: 275462063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 104 (44.7 bits)