BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0531300 Os08g0531300|AK067106
(313 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01920.1 | chr3:317449-319001 FORWARD LENGTH=308 345 2e-95
AT5G60590.2 | chr5:24357066-24358443 FORWARD LENGTH=289 52 3e-07
>AT3G01920.1 | chr3:317449-319001 FORWARD LENGTH=308
Length = 307
Score = 345 bits (885), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 209/265 (78%), Gaps = 5/265 (1%)
Query: 42 PHRASFAVVALHKRNPKRLKYASQRQFTRGDAGMLRVQVEPSGEDAWKLEPVVELINRGA 101
P R A+ A KR+PKRLKY++ R FT+ + ++ ++V+P G D+WKL+PV++L+ +GA
Sbjct: 39 PRRYIVALAA--KRSPKRLKYSTPR-FTK-EGELVYIEVDPCGVDSWKLQPVIDLLKQGA 94
Query: 102 VGIIPTDTVYSIVCDLSNNDSVERLRRIKGIGDSKPLSILCRSLRDIDTYTTGFPRGTNQ 161
VG+IPTDTVY+I CD N+ +VERLRRIK I SKPLSILCRSLRDIDT+T GFPRG
Sbjct: 95 VGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDTFTMGFPRGDGH 154
Query: 162 GQANIFRAVKRVIPGPYTFILPATKELPKQCIRHG-SSTRYAKRRQVGVRLPDDPICEAI 220
G AN+FRAVK+ +PGPYTFIL A+KELPKQC+ +G +S +YA R+ VGVR+ DD +C+AI
Sbjct: 155 GHANVFRAVKQCLPGPYTFILTASKELPKQCVGYGTTSVKYASRKNVGVRISDDALCQAI 214
Query: 221 LQNLDEPLICTSVKSLSEDEWILDPVIIADIYEQQGLDFIVDGGTRIADPSTVVDMTGSY 280
LQ +D PLICTSVK E+EW++DP I DIY +GLDF+VDGG R+A+PST+VDMTG Y
Sbjct: 215 LQQMDAPLICTSVKGPKENEWMIDPTAIGDIYGPEGLDFVVDGGIRVAEPSTIVDMTGPY 274
Query: 281 PTIIRQGKGPKLDWMVAEDEEQESR 305
P +IR+GKGP L WMV ED+E R
Sbjct: 275 PKVIREGKGPILPWMVVEDDESSLR 299
>AT5G60590.2 | chr5:24357066-24358443 FORWARD LENGTH=289
Length = 288
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 30/209 (14%)
Query: 91 EPVVELINRGAVGIIPTDTVYSIVCDLSNNDSVERLRRIKGIGDSKPLSILCRSLRDID- 149
+ +E I V +PTDT+Y CD + ++V R+ IKG + PL+I + DI
Sbjct: 77 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136
Query: 150 -TYTTGFPRGTNQGQANIFRAVKRVIPGPYTFILP-ATKELPKQCIRHGSSTRYAKRRQV 207
T+ P G + ++PGP T +L + ++ + G T +
Sbjct: 137 VATTSHLPHGL----------LDSLLPGPVTLVLQRGESSILEKSLNPGIGT-------I 179
Query: 208 GVRLPDDPICEAILQNLDEPLICTSVKSLSEDEWILDPVIIADIYE-QQGLDFIVDGGTR 266
GVR+PD + + L TS +LS D V + D Q ++ DGG
Sbjct: 180 GVRVPDCEFIREVSRGSGSVLALTSA-NLSGDR---SSVCVKDFENLWQHCAYVYDGGLL 235
Query: 267 IAD--PSTVVDMT--GSYPTIIRQGKGPK 291
+ ST+VD+T G Y IIR G +
Sbjct: 236 PSGRAGSTIVDLTKVGKY-KIIRPGSAKQ 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,582,062
Number of extensions: 283269
Number of successful extensions: 528
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 215
Effective length of database: 8,419,801
Effective search space: 1810257215
Effective search space used: 1810257215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)