BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0530100 Os08g0530100|AK066822
(126 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14590.1 | chr1:4998957-5000617 REVERSE LENGTH=387 107 1e-24
AT4G19970.1 | chr4:10818242-10825343 FORWARD LENGTH=716 105 4e-24
AT2G02061.1 | chr2:498025-499559 FORWARD LENGTH=409 105 6e-24
AT5G44820.1 | chr5:18095795-18097558 REVERSE LENGTH=368 103 2e-23
AT4G15970.1 | chr4:9049390-9051370 FORWARD LENGTH=359 100 2e-22
AT1G28710.1 | chr1:10086850-10088025 REVERSE LENGTH=341 69 8e-13
AT1G28700.1 | chr1:10083773-10084958 REVERSE LENGTH=339 66 5e-12
AT1G28695.1 | chr1:10081894-10083054 REVERSE LENGTH=330 64 1e-11
AT5G40900.1 | chr5:16391847-16393375 FORWARD LENGTH=323 57 2e-09
>AT1G14590.1 | chr1:4998957-5000617 REVERSE LENGTH=387
Length = 386
Score = 107 bits (267), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 1 RPNGGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERAQAE-LSRRADVRMQFLDT 59
RPNGGF +VR+ RT+ FY FP G ++Q VL +AE R ++M+FL+T
Sbjct: 237 RPNGGFNFVRSNNRTILFYKYWYASRLRFP-GYHDQDVLNFLKAEPFVFRIGLKMRFLNT 295
Query: 60 AHCGGFCQLSRDMARVCTLHANCCTGLANKVHDLAAVLRDWRNYTXXXXXXXXXGGFGWT 119
A+ GG C+ SRD+ V T+HANCC G+ +K+HDL +L+DW+++ GF W
Sbjct: 296 AYFGGLCEPSRDLNLVRTMHANCCYGMESKLHDLRIMLQDWKDFMSLPLHLKQSSGFSWK 355
Query: 120 TPGKC 124
P C
Sbjct: 356 VPQNC 360
>AT4G19970.1 | chr4:10818242-10825343 FORWARD LENGTH=716
Length = 715
Score = 105 bits (263), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 3 NGGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERAQAELSRRADVRMQFLDTAHC 62
NGGF YV++ R+++FY +P ++ + L ++M+F DT +
Sbjct: 596 NGGFTYVKSNHRSIEFYKFWYNSRLDYPKMHDQDVFNQIKHKALVSEIGIQMRFFDTVYF 655
Query: 63 GGFCQLSRDMARVCTLHANCCTGLANKVHDLAAVLRDWRNYTXXXXXXXXXGGFGWTTPG 122
GGFCQ SRD+ VCT+HANCC GLA K+HDL VL DWRNY W+ P
Sbjct: 656 GGFCQTSRDINLVCTMHANCCVGLAKKLHDLNLVLDDWRNYLSLSEPVKNT---TWSVPM 712
Query: 123 KC 124
KC
Sbjct: 713 KC 714
Score = 93.2 bits (230), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 3 NGGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERAQAELS-RRADVRMQFLDTAH 61
N GF YV+A +T FY FP G ++Q V + +L + ++M+F DT +
Sbjct: 257 NSGFTYVKANNKTSKFYKYWIRSSRKFP-GKHDQDVFNFIKNDLHVEKLGIKMRFFDTVY 315
Query: 62 CGGFCQLSRDMARVCTLHANCCTGLANKVHDLAAVLRDWRNY 103
GGFCQ SRD+ V T+HANCC GL NKV++L A L DW+ Y
Sbjct: 316 FGGFCQPSRDINVVNTMHANCCIGLDNKVNNLKAALEDWKRY 357
>AT2G02061.1 | chr2:498025-499559 FORWARD LENGTH=409
Length = 408
Score = 105 bits (262), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 1 RPNGGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERAQAE-LSRRADVRMQFLDT 59
RPNGGF +VRA R++ FY +P ++Q VL + + + +R++FL+T
Sbjct: 261 RPNGGFTFVRANNRSIGFYKFWYDSRTKYPK-NHDQDVLNFIKTDPFLWKLRIRIRFLNT 319
Query: 60 AHCGGFCQLSRDMARVCTLHANCCTGLANKVHDLAAVLRDWRNYTXXXXXXXXXGGFGWT 119
+ GGFC+ S+D+ VCT+HANCC GL +K+HDL +L+DWR++ GF W+
Sbjct: 320 VYFGGFCEPSKDLNLVCTMHANCCFGLDSKLHDLRIMLQDWRDFKSLPLHSNQSSGFTWS 379
Query: 120 TPGKC 124
P C
Sbjct: 380 VPQNC 384
>AT5G44820.1 | chr5:18095795-18097558 REVERSE LENGTH=368
Length = 367
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 3 NGGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERAQAE-LSRRADVRMQFLDTAH 61
NGGF YVR+ R+++FY +P ++Q V R + E ++M+F DT +
Sbjct: 246 NGGFTYVRSNNRSIEFYKFWHKSRLDYP-DLHDQDVFNRIKHEPFISEIGIQMRFFDTVY 304
Query: 62 CGGFCQLSRDMARVCTLHANCCTGLANKVHDLAAVLRDWRNYTXXXXXXXXXGGFGWTTP 121
GGFCQ SRD+ VCT+HANCC GL K+HDL VL DWR Y W+ P
Sbjct: 305 FGGFCQTSRDINLVCTMHANCCIGLDKKLHDLNLVLDDWRKYLSLSEPVQNT---TWSVP 361
Query: 122 GKCIR 126
KC+
Sbjct: 362 MKCLE 366
>AT4G15970.1 | chr4:9049390-9051370 FORWARD LENGTH=359
Length = 358
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 3 NGGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERAQAE-LSRRADVRMQFLDTAH 61
NGGF +V+A +RT+DFY +P ++Q VL++ + + ++M+FLDT +
Sbjct: 180 NGGFTFVKANQRTIDFYNYWYMSRLRYP-DRHDQDVLDQIKGGGYPAKIGLKMRFLDTKY 238
Query: 62 CGGFCQLSRDMARVCTLHANCCTGLANKVHDLAAVLRDWRNYTXXXXXXXXXGGFGWTTP 121
GGFC+ SRD+ +VCT+HANCC GL NK+ DL V+ DW NY W P
Sbjct: 239 FGGFCEPSRDLDKVCTMHANCCVGLENKIKDLRQVIVDWENYVSAAKTTDGQ-IMTWRDP 297
Query: 122 GKCIR 126
C++
Sbjct: 298 ENCMK 302
>AT1G28710.1 | chr1:10086850-10088025 REVERSE LENGTH=341
Length = 340
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 3 NGGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERA-QAELSRRADVRMQFLDTAH 61
N GF +VR+ +T+ + G EQ VL+ + + + + FL+T
Sbjct: 212 NTGFYHVRSNNKTISLFQKWYDMRLK-STGMKEQDVLKSLLDSGFFNQLGLNVGFLNTTE 270
Query: 62 CGGFCQLSRDMARVCTLHANCCTGLANKVHDLAAVLRDWRNY 103
GFCQ S DM V T+HANCC + K+ DL VLRDW+ Y
Sbjct: 271 FSGFCQDSHDMGVVTTVHANCCRHILAKISDLTLVLRDWKRY 312
>AT1G28700.1 | chr1:10083773-10084958 REVERSE LENGTH=339
Length = 338
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 3 NGGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERA-QAELSRRADVRMQFLDTAH 61
N GF + R+ +T+ + G EQ VL+ + + + + FL TA
Sbjct: 210 NTGFYHARSNNKTISLFQKWYDMRLK-SLGMKEQDVLKNLLDSGFFNQLGLNVGFLSTAE 268
Query: 62 CGGFCQLSRDMARVCTLHANCCTGLANKVHDLAAVLRDWRNY 103
GFCQ S DM V T+HANCC + K+ DL+ LRDW+ Y
Sbjct: 269 FSGFCQDSPDMGAVTTVHANCCVHIPAKISDLSLALRDWKRY 310
>AT1G28695.1 | chr1:10081894-10083054 REVERSE LENGTH=330
Length = 329
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 3 NGGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERA-QAELSRRADVRMQFLDTAH 61
N GF +VR+ +T+ + G EQ VL+ + + + + FL T
Sbjct: 201 NTGFYHVRSNNKTISLFQKWYDMRLN-STGMKEQDVLKNLLDSGFFNQLGLNVGFLSTTE 259
Query: 62 CGGFCQLSRDMARVCTLHANCCTGLANKVHDLAAVLRDWRNY 103
GFCQ S M V T+HANCC + KV DL VLRDW+ Y
Sbjct: 260 FSGFCQDSPHMGVVTTVHANCCLHIPAKVFDLTRVLRDWKRY 301
>AT5G40900.1 | chr5:16391847-16393375 FORWARD LENGTH=323
Length = 322
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 4 GGFLYVRAARRTVDFYXXXXXXXXXFPPGTNEQHVLERAQAELSRRADVRMQFLDTAHCG 63
GGF Y ++ T+D + +P N+ + ++ + D ++ FLD A+ G
Sbjct: 210 GGFFYAKSNDITIDMFNILNVERVLYPATGNQSLCDIVKREDVIKALDKKVTFLDDANFG 269
Query: 64 GFCQLS-RDMARVCTLHANCCTGLANKVHDLAAVLRDWRN 102
FCQ + +D +++ T+HA+CC +KV L +L+D +N
Sbjct: 270 KFCQPNPQDQSKITTVHASCCHDTKSKVRYLKLLLQDRKN 309
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.140 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,337,086
Number of extensions: 67508
Number of successful extensions: 143
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 10
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)