BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0529800 Os08g0529800|AK107138
(438 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G14180.1 | chr5:4571442-4574413 REVERSE LENGTH=419 383 e-106
AT2G15230.1 | chr2:6612666-6615204 FORWARD LENGTH=394 252 3e-67
AT1G73920.1 | chr1:27791194-27794698 FORWARD LENGTH=705 67 3e-11
AT1G18460.1 | chr1:6352682-6355971 FORWARD LENGTH=702 60 2e-09
>AT5G14180.1 | chr5:4571442-4574413 REVERSE LENGTH=419
Length = 418
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 241/363 (66%), Gaps = 5/363 (1%)
Query: 74 FGYPCEEHEVTTQDGYILGLQXXXXXXXXXXXXXXXXXXXQPVLLQHGVLVDGMTWLLGS 133
FGY CEEH+V TQDGYIL +Q QPVL+QHG+LVDGM+WLL
Sbjct: 59 FGYKCEEHDVVTQDGYILNMQRIPEGRAGAVAGDGGKR--QPVLIQHGILVDGMSWLLNP 116
Query: 134 PEESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRSYWNWSWDDIVVNDMPAIVDYV 193
+++LP ILADQGFDVW+ N RGTR+S RH L+P R++WNW+WD++V D+PA+ D++
Sbjct: 117 ADQNLPLILADQGFDVWMGNTRGTRFSRRHKYLNPSQRAFWNWTWDELVSYDLPAMFDHI 176
Query: 194 CSHTGQKPHYVGHSMGTLVALAAFSEGRMVDKLKSAALLSPVAYLSHITTPIGVVLAKAF 253
TGQK HY+GHS+GTL+ A+FSE +VD+++SAA+LSPVAYLSH+TT IG + AK F
Sbjct: 177 HGLTGQKIHYLGHSLGTLIGFASFSEKGLVDQVRSAAMLSPVAYLSHMTTVIGDIAAKTF 236
Query: 254 AGELISDLLGIAEFNPASPQVSNLVRTFCRKPGMNCYDLLTSFTGKNYCLNNSAADIFLK 313
E S +LG EFNP S V + ++ C K G++CYDL++ TGKN CLN S D+FL
Sbjct: 237 LAEATS-ILGWPEFNPKSGLVGDFIKAICLKAGIDCYDLVSVITGKNCCLNASTIDLFLA 295
Query: 314 YEPQPTSTKTLIHLAQTVRDGVLTKYDYVMPDANVARYGQADPPAYDMAAIPAWFPIFLS 373
EPQ TSTK +IHLAQTVRD L KY+Y D N+ YGQA PPAY+++AIP P+F S
Sbjct: 296 NEPQSTSTKNMIHLAQTVRDKELRKYNYGSSDRNIKHYGQAIPPAYNISAIPHELPLFFS 355
Query: 374 YGGRXXXXXXXXXXXXXXXXXXXXXXXXXXTVQYLPQLAHADFVIGVCAKDLVYNDVISF 433
YGG VQ++ AHADF++GV AKD+VYN V +F
Sbjct: 356 YGG--LDSLADVKDVEFLLDQFKYHDIDKMNVQFVKDYAHADFIMGVTAKDVVYNQVATF 413
Query: 434 FRR 436
F+R
Sbjct: 414 FKR 416
>AT2G15230.1 | chr2:6612666-6615204 FORWARD LENGTH=394
Length = 393
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 195/363 (53%), Gaps = 16/363 (4%)
Query: 73 PFGYPCEEHEVTTQDGYILGLQXXXXXXXXXXXXXXXXXXXQPVLLQHGVLVDGMTWLLG 132
P Y C EH + T+DGYIL LQ PVLLQHG+ + G W L
Sbjct: 39 PANYSCTEHSIQTKDGYILALQRVASLGPRLQSG-------PPVLLQHGLFMAGDVWFLN 91
Query: 133 SPEESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRSYWNWSWDDIVVNDMPAIVDY 192
SP+ESL +ILAD GFDVW+ N RGTR+S HV+L + +W+WSW D+ + D+ ++ Y
Sbjct: 92 SPKESLGFILADHGFDVWVGNVRGTRYSYGHVTLSDTDKEFWDWSWQDLAMYDLAEMIQY 151
Query: 193 VCSHTGQKPHYVGHSMGTLVALAAFSEGRMVDKLKSAALLSPVAYLSHITTPIGVVLAKA 252
+ S + K VGHS GT+++ AA ++ + + +++AALL P++YL H+T P+ +
Sbjct: 152 LYSISNSKIFLVGHSQGTIMSFAALTQPHVAEMVEAAALLCPISYLDHVTAPLVERMVFM 211
Query: 253 FAGELISDLLGIAEFNPASPQVSNLVRTFCRKPGMNCYDLLTSFTGKNYCLNNSAADIFL 312
+++ LG+ + N S + LV + C + M+C D LTS TG N C N S + +L
Sbjct: 212 HLDQMVV-ALGLHQINFRSDMLVKLVDSLC-EGHMDCTDFLTSITGTNCCFNASKIEYYL 269
Query: 313 KYEPQPTSTKTLIHLAQTVRDGVLTKYDYVMPDANVARYGQADPPAYDMAAIPAWFPIFL 372
YEP P+S K + HL Q +R G +YDY N+ YG + PP + ++ IPA P+++
Sbjct: 270 DYEPHPSSVKNIRHLFQMIRKGTFAQYDYGYF-KNLRTYGLSKPPEFILSHIPASLPMWM 328
Query: 373 SYGGRXXXXXXXXXXXXXXXXXXXXXXXXXXTVQYLPQLAHADFVIGVCAKDLVYNDVIS 432
YGG + YL H DFV+G AK+ VY +I
Sbjct: 329 GYGG------TDGLADVTDVEHTLAELPSSPELLYLEDYGHIDFVLGSSAKEDVYKHMIQ 382
Query: 433 FFR 435
FFR
Sbjct: 383 FFR 385
>AT1G73920.1 | chr1:27791194-27794698 FORWARD LENGTH=705
Length = 704
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 126/327 (38%), Gaps = 71/327 (21%)
Query: 74 FGYPCEEHEVTTQDGYILGLQXXXXXXXXXXXXXXXXXXXQPVLLQHGVLVDGMTWLLGS 133
GYP E V T DGY+L L+ + V LQHGVL M W+
Sbjct: 303 LGYPYEAIRVITSDGYVLVLERIPRRDAR-----------KAVFLQHGVLDSSMGWVSNG 351
Query: 134 PEESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRSYWNWSWDDIVVNDMPAIVDYV 193
S + DQG+DV++ N RG S HV+ + S+ +W +S ++ D+PA+++ +
Sbjct: 352 VVGSPAFAAYDQGYDVFLGNFRGL-VSRDHVNKNISSKEFWRYSINEHGTEDIPAMIEKI 410
Query: 194 ----------C-----SHTGQKPHY----VGHSMGTLVALAAFSEGRMVDK---LKSAAL 231
C Q+ Y + HS+G L ++ +K L L
Sbjct: 411 HEIKTTELKLCQPNIDEEINQEEPYKLCAICHSLGGAAILMYVITRKIKEKPHRLSRLIL 470
Query: 232 LSPVAYLSHITTPIGVVLAKAFAGELISDLLGIAEFNPA--------SPQVSNLVRTFCR 283
LSP + H + +G + + + IS +L A PA ++ L R F
Sbjct: 471 LSPAGF--HEDSNLGFTIVE-YIFLFISPVL--ARIVPAFYIPTRFFRMLLNKLARDFHN 525
Query: 284 KPGMN--CYDLLTSFTGKN------------YCLNNSAADIFLKYEPQPTSTKTLIHLAQ 329
P + L++ G + Y +N+ A S + HLAQ
Sbjct: 526 YPALGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPA----------VSFRVAQHLAQ 575
Query: 330 TVRDGVLTKYDYVMPDANVARYGQADP 356
G YDY AN+ YG +P
Sbjct: 576 IKHTGKFRMYDYGSRSANMEVYGSPEP 602
>AT1G18460.1 | chr1:6352682-6355971 FORWARD LENGTH=702
Length = 701
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 118/322 (36%), Gaps = 61/322 (18%)
Query: 74 FGYPCEEHEVTTQDGYILGLQXXXXXXXXXXXXXXXXXXXQPVLLQHGVLVDGMTWLLGS 133
GYP E V T DGY L L+ + V LQHGV+ M W+
Sbjct: 301 LGYPYEAIRVVTSDGYGLLLERIPRRDAR-----------KAVYLQHGVMDSSMGWVSNG 349
Query: 134 PEESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRSYWNWSWDDIVVNDMPAIVDYV 193
S + DQG+DV++ N RG S HV + S+ +W +S ++ D+PA+++ +
Sbjct: 350 VVGSPAFAAYDQGYDVFLGNFRGLV-SRDHVKKNISSKDFWRYSINEHATEDIPAMIEKI 408
Query: 194 CS-HTGQKPHY------------------VGHSMGTLVALAAFSEGRMVDK---LKSAAL 231
T + Y V HS+G L ++ +K L L
Sbjct: 409 HEIKTSELKLYQPTMEEVVNEDQPYKLCVVSHSLGGAAVLMYVITRKIEEKPHRLSRLIL 468
Query: 232 LSPVAY----------LSHITTPIGVVLAKAFAGELISDLLGIAEFNPAS------PQVS 275
LSP + + + +G VL++ I N + P V
Sbjct: 469 LSPAGFHYDSNMCFTLMEYTFLFLGPVLSRIVPAFYIPTKFFRMLLNKLARDFHNYPAVG 528
Query: 276 NLVRTFCRK-PGMNCYDLLTSFTGKNYCLNNSAADIFLKYEPQPTSTKTLIHLAQTVRDG 334
LV+T G + + + +Y +N+ S + HLAQ G
Sbjct: 529 GLVQTLMSYVVGGDSSNWVGVMGLPHYNMNDMPG----------ISFRVAQHLAQIKHSG 578
Query: 335 VLTKYDYVMPDANVARYGQADP 356
+DY AN+ YG +P
Sbjct: 579 KFKMFDYGSSSANMDVYGSPEP 600
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,222,050
Number of extensions: 305497
Number of successful extensions: 656
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 649
Number of HSP's successfully gapped: 4
Length of query: 438
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 336
Effective length of database: 8,310,137
Effective search space: 2792206032
Effective search space used: 2792206032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)