BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0526700 Os08g0526700|Os08g0526700
(432 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04850.1 | chr1:1365311-1368706 REVERSE LENGTH=414 239 3e-63
AT5G48690.1 | chr5:19747270-19748968 REVERSE LENGTH=324 199 2e-51
AT2G01650.1 | chr2:284851-286394 REVERSE LENGTH=459 60 3e-09
AT5G35690.1 | chr5:13865027-13868117 REVERSE LENGTH=604 58 9e-09
>AT1G04850.1 | chr1:1365311-1368706 REVERSE LENGTH=414
Length = 413
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 211/357 (59%), Gaps = 64/357 (17%)
Query: 36 MATPQLDKRILSELELMGFPTARSIRALHFSGNSSLESAINWLLEHENDPDIDQLPLIPR 95
M P +D IL ELE MGFP AR+ RALH+SGN+SLE+A+NW++EHENDPD+D++P +P
Sbjct: 106 MVVPDVDNNILEELEAMGFPKARATRALHYSGNASLEAAVNWVVEHENDPDVDEMPKVPS 165
Query: 96 EINIECGD---TPNEARNDIQGM--RADAQESKPEESTAAGRQKETSQVERELNADQNED 150
N+ TP E + Q + RA ++ + E+ R+KE ++ +EL + +
Sbjct: 166 NSNVGPAKPALTPEEVKLKAQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRME 225
Query: 151 EV--RRRIIELFKSKQDGQERERGRIRNQLQEDKRERIRAAKDLMEAKRTLEENQRKRVM 208
EV R+R++ L K++++ ++R R +IR +L+EDK ER
Sbjct: 226 EVNERKRLMFLRKAEKEEEKRAREKIRQKLEEDKAER----------------------- 262
Query: 209 ESRKADQXXXXXXXXXXXXXXXDDKAERRRRLGLPMENPVA-----SVPTLTPTKIK-PV 262
RR+LGLP E+P SVP + K+ P+
Sbjct: 263 ----------------------------RRKLGLPPEDPATAAAKPSVPVVEEKKVTLPI 294
Query: 263 EPAVSPEQLRDCLRNLKKNYKDDTTKVTRAFQILLKIIANIVKNPEEEKFRRIRLNNPVF 322
PA EQ+R+CLR+LK+ +K+D KV RAFQ LL + N+ KNP+EEKFR+IRL N F
Sbjct: 295 RPATKTEQMRECLRSLKQAHKEDDAKVKRAFQTLLTYMGNVAKNPDEEKFRKIRLTNQTF 354
Query: 323 KERVGNLQGGVEFLELCGFMKLAISGYLVMPRDNINLALLNAAGVEVASAMENPYFG 379
+ERVG+L+GG+EF+ELCGF K+ +L +PRD I+ A++N+AG E+ SA+ NP+FG
Sbjct: 355 QERVGSLRGGIEFMELCGFEKIEGGEFLFLPRDKIDSAIINSAGTELNSAINNPFFG 411
>AT5G48690.1 | chr5:19747270-19748968 REVERSE LENGTH=324
Length = 323
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 196/350 (56%), Gaps = 50/350 (14%)
Query: 37 ATPQLDKRILSELELMGFPTARSIRALHFSGNSSLESAINWLLEHENDPDIDQLPLIPRE 96
A +++ +L ELE MGF AR+ ALH SGNSSLE+A+NW+++HEN+ + +PL+ E
Sbjct: 8 AAIEVNHGLLKELEDMGFSMARAAWALHHSGNSSLEAAVNWIIDHENESQFENMPLV--E 65
Query: 97 INIECGDTPNEARNDIQGMRADAQESKPEESTAAGRQKETSQVERELNADQNEDEVRRRI 156
NIE ++PN + + + T+ R KE S+ R+L +Q
Sbjct: 66 FNIEI-ESPNPSDDTAE--------------TSHARAKELSEQARKLREEQET------- 103
Query: 157 IELFKSKQDGQERERGRIRNQLQEDKRERIRAAKDLMEAKRTLEENQRKRVMESRKADQX 216
+ +E ++ERIRA K+LME KR EEN+RKR + RKA++
Sbjct: 104 -------------------KREREREKERIRAGKELMETKRIAEENERKRNIALRKAEKD 144
Query: 217 XXXXXXXXXXXXXXDDKAERRRRLGLPMENPVAS----VPTLTPTKIKPVEPAV--SPEQ 270
DK ER+RRLGLP E AS V L P +I P+V E+
Sbjct: 145 EEKKAREKIMLKVNADKLERKRRLGLPTETESASTSNPVSPLDPKRIVMSSPSVVSKAEE 204
Query: 271 LRDCLRNLKKNYKDDTTKVTR-AFQILLKIIANIVKNPEEEKFRRIRLNNPVFKERVGNL 329
+R+CLR+L++N+KD+ ++TR F+ LL I+ N+ K P+EE++RRIRL N +F ERVG
Sbjct: 205 MRECLRSLRRNHKDEDPRITRRVFETLLTIVRNVAKKPDEERYRRIRLKNRLFHERVGRY 264
Query: 330 QGGVEFLELCGFMKLAISGYLVMPRDNINLALLNAAGVEVASAMENPYFG 379
+ G+EF+ELCGF ++ S +L + + + ++ L A + SA NP+FG
Sbjct: 265 KEGIEFMELCGFKRVEGSEFLSLSKRDSDINRLRDAAFLLNSASANPFFG 314
>AT2G01650.1 | chr2:284851-286394 REVERSE LENGTH=459
Length = 458
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 292 AFQILLKIIANIVKNPEEEKFRRIRLNNPVFKERVGNLQGGVEFLELCGF 341
+ +LL++ NIVK PE KFR++R++N KE +G++ GGVE LEL GF
Sbjct: 182 SIDVLLRLFKNIVKEPENAKFRKVRMSNAKIKEAIGDVAGGVELLELVGF 231
>AT5G35690.1 | chr5:13865027-13868117 REVERSE LENGTH=604
Length = 603
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 288 KVTRAFQILLKIIANIVKNPEEEKFRRIRLNNPVFKERVGNLQGGVEFLELCGFMKLAIS 347
+ T Q+LLKI+ NI++ P E KF+R+R NP K + N VE L + GF+ +S
Sbjct: 509 QATTVLQMLLKIVRNIIEQPNEMKFKRLRKGNPAIKRNILNFPAAVEILSVVGFVDEMVS 568
Query: 348 -------GYLVMPRDNINLALLNAAGVE 368
YLV+ R++ L + + +E
Sbjct: 569 ESTGAQEPYLVLKRNDPGLLWIAKSMIE 596
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,367,929
Number of extensions: 335701
Number of successful extensions: 1698
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1695
Number of HSP's successfully gapped: 6
Length of query: 432
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 331
Effective length of database: 8,337,553
Effective search space: 2759730043
Effective search space used: 2759730043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)