BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0524400 Os08g0524400|J100068F10
(263 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07390.1 | chr3:2365452-2366273 FORWARD LENGTH=274 116 1e-26
AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394 96 1e-20
AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395 93 2e-19
AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405 71 7e-13
AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467 67 1e-11
AT5G48750.1 | chr5:19770052-19770819 REVERSE LENGTH=256 63 2e-10
AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403 62 4e-10
AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396 60 9e-10
>AT3G07390.1 | chr3:2365452-2366273 FORWARD LENGTH=274
Length = 273
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 40 YAACEDLPSLGAALHYTYDASKSSLSXXXXXXXXXXXX-XXXXXLNPTGEGMAGTQALVA 98
+ +CEDLP L + LHYTY++S SSLS +NPTG MAG+QA +A
Sbjct: 61 FDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLA 120
Query: 99 LKGGSSSSAPAVKTYNITGYVALGGASTPIAFPATDLAADEGSGGKIRLYGKLQLHKGMK 158
+ G + AP VKTYNI+ Y +L +AF +L A+ SGG+I ++ +++ G
Sbjct: 121 YRSGGGA-APVVKTYNISSYSSL--VEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGAD 177
Query: 159 SVNQVWQVGSSVTGGAPDKHAFGPANLASKAKL 191
SVNQVWQ+G +VT G P H FGP NL S L
Sbjct: 178 SVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVL 210
>AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394
Length = 393
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 9/168 (5%)
Query: 32 EKFPAGRAYAACEDLPSLGAALHYTYDASKSSLSXXXXXXXXXXXXXXXXXLNPTGEGMA 91
+ F + Y C DLP L A LHY+YDAS ++L+ +NP GM
Sbjct: 31 QTFSGDKTYPHCLDLPQLKAFLHYSYDASNTTLAVVFSAPPAKPGGWIAWAINPKATGMV 90
Query: 92 GTQALVALKGGSSSSAPAVKTYNITGYVALGGASTPIAFPATDLAADEGS--GGKIRLYG 149
G+Q LVA K + A VKT NI+ Y +L + +AF D+ A+E + GG +R++
Sbjct: 91 GSQTLVAYKDPGNGVA-VVKTLNISSYSSL--IPSKLAFDVWDMKAEEAARDGGSLRIFA 147
Query: 150 KLQLHKGMKS---VNQVWQVGSSV-TGGAPDKHAFGPANLASKAKLVL 193
++++ + + VNQVWQVG + GG +HAF ANLAS + L L
Sbjct: 148 RVKVPADLVAKGKVNQVWQVGPELGPGGMIGRHAFDSANLASMSSLDL 195
>AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395
Length = 394
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 34 FPAGRAYAACEDLPSLGAALHYTYDASKSSLSXXXXXXXXXXXXXXXXXLNPTGEGMAGT 93
F ++Y C DLP L A LHY+YDAS ++L+ +NP GMAG+
Sbjct: 34 FSGVKSYPHCLDLPDLKAILHYSYDASNTTLAVVFSAPPSKPGGWIAWAINPKSTGMAGS 93
Query: 94 QALVALKGGSSSSAPAVKTYNITGYVALGGASTPIAFPATDLAADEGS--GGKIRLYGKL 151
QALVA K S+ A +V T NI Y +L + ++F D+ A+E + GG +R++ K+
Sbjct: 94 QALVASKDPSTGVA-SVTTLNIVSYSSL--VPSKLSFDVWDVKAEEAANDGGALRIFAKV 150
Query: 152 QLHKGMKS---VNQVWQVGSSVTGGAPDKHAFGPANLASKAKLVL 193
++ + + VNQVWQVG V+ G H F NL S L L
Sbjct: 151 KVPADLAASGKVNQVWQVGPGVSNGRIQAHDFSGPNLNSVGSLDL 195
>AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405
Length = 404
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 6/161 (3%)
Query: 32 EKFPAGRAYAACEDLPSLGAALHYTYDASKSSLSXXXXXXXXXXXXXXXXXLNPTGEGMA 91
+F A+A C DL +LG+ LH+TY+ ++S LNP+ M
Sbjct: 32 HRFTNNLAFADCSDLSALGSFLHWTYNEQNGTVSIAYRHPGTSASSWVAWGLNPSSTQMV 91
Query: 92 GTQALVALKGGSSSSAPAVKTYNITGY-VALGGASTPIAFPATDLAADEGSGGKIRLYGK 150
GTQALVA +++ A T +++ Y L +S ++F + L+A S G++ ++
Sbjct: 92 GTQALVAFTNTTTNQFQA-YTSSVSSYGTRLERSS--LSFGVSGLSATLVS-GEVTIFAT 147
Query: 151 LQLHKGMKSVNQVWQVGSSVTGGAPDKHAFGPANLASKAKL 191
L+L + + NQ+WQVG V G P H N+ S ++
Sbjct: 148 LELSPNLITANQLWQVG-PVVNGVPASHQTSGDNMRSSGRI 187
>AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467
Length = 466
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 3/160 (1%)
Query: 34 FPAGRAYAACEDLPSLGAALHYTYDASKSSLSXXXXXXXXXXXXXXXXXLNPTGEGMAGT 93
F G+++ +C DL L + LH+ Y L +NPT +GM G
Sbjct: 42 FNNGKSFRSCTDLLVLNSYLHFNYAQETGVLEIAYHHSNLESSSWISWAINPTSKGMVGA 101
Query: 94 QALVALKGGSSSSAPAVKTYNITGYVALGGASTPIAFPATDLAADEGSGGKIRLYGKLQL 153
QALVA + +S A T +I Y + S P++ T ++A E S G++ ++ L L
Sbjct: 102 QALVAYRNSTSGVMRAY-TSSINSYSPMLQES-PLSLRVTQVSA-EYSNGEMMIFATLVL 158
Query: 154 HKGMKSVNQVWQVGSSVTGGAPDKHAFGPANLASKAKLVL 193
VN +WQ G G HA NL S A L L
Sbjct: 159 PPNTTVVNHLWQDGPLKEGDRLGMHAMSGDNLKSMASLDL 198
>AT5G48750.1 | chr5:19770052-19770819 REVERSE LENGTH=256
Length = 255
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 3/162 (1%)
Query: 32 EKFPAGRAYAACEDLPSLGAALHYTYDASKSSLSXXXXXXXXXXXXXXXXXLNPTGEGMA 91
F G+ + +C DLP L + LHY+Y L +NPT +GM
Sbjct: 37 HNFNNGKHFRSCVDLPVLDSFLHYSYVRETGVLEVAYRHTNIESSSWIAWGINPTSKGMI 96
Query: 92 GTQALVALKGGSSSSAPAVKTYNITGYVALGGASTPIAFPATDLAADEGSGGKIRLYGKL 151
G Q L+A + +S A T +I GY + P++F T L+A E ++ ++ +
Sbjct: 97 GAQTLLAYRNSTSGFMRA-YTSSINGYTPMLQEG-PLSFRVTQLSA-EYLNREMTIFATM 153
Query: 152 QLHKGMKSVNQVWQVGSSVTGGAPDKHAFGPANLASKAKLVL 193
VN +WQ G G HA +L S A L L
Sbjct: 154 VWPSNTTVVNHLWQDGPLKEGDRLGMHAMSGNHLKSMANLDL 195
>AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403
Length = 402
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 30/175 (17%)
Query: 33 KFPAGRAYAACEDLPSLGAALHYTYDASKSSLSXXXXXXXXXXXXXXXXXLNPTGEGMAG 92
KF + + +C DLP L + LHYTY++S SL +NPT GM G
Sbjct: 38 KFSSNNVFDSCNDLPFLDSFLHYTYESSTGSLHIAYRHTKLTSGKWVAWAVNPTSTGMVG 97
Query: 93 TQALVA--------------LKGGSSSSAPAVKTYNITGYVALGGASTPIAFPATDLAAD 138
QA+VA ++ +S ++N++G A + + + LA D
Sbjct: 98 AQAIVAYPQSDGTVRVYTSPIRSYQTSLLEGDLSFNVSGLSATYQNNEIVVLASLKLAQD 157
Query: 139 EGSGGKIRLYGKLQLHKGMKSVNQVWQVGSSVTGGAPDKHAFGPANLASKAKLVL 193
G+GG ++N VWQ G S++G + H N+ S + L L
Sbjct: 158 LGNGG---------------TINTVWQDG-SMSGNSLLPHPTSGNNVRSVSTLNL 196
>AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396
Length = 395
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 33 KFPAGRAYAACEDLPSLGAALHYTYDASKSSLSXXXXXXXXXXXXXXXXXLNPTGEGMAG 92
KF R + +C DLP L + LHYTYD+S +L +NPT GM G
Sbjct: 31 KFSTNRLFESCNDLPVLDSFLHYTYDSSSGNLQIAYRHTKLTPGKWVAWAVNPTSTGMVG 90
Query: 93 TQALVALKGGSSSSAPAVKTYN--ITGYVALGGASTPIAFPATDLAADEGSGGKIRLYGK 150
QA+VA S V+ Y I+ Y ++F + L+A ++ +Y
Sbjct: 91 AQAIVAYP----QSDGTVRAYTSPISSY-QTSLLEAELSFNVSQLSATY-QNNEMVIYAI 144
Query: 151 LQL---HKGMKSVNQVWQVGSSVTGGAPDKHAFGPANLASKAKLVL 193
L L + G+ +N VWQ G S++G P H N+ S + L L
Sbjct: 145 LNLPLANGGI--INTVWQDG-SLSGNNPLPHPTSGNNVRSVSTLNL 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,317,659
Number of extensions: 112041
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 8
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)