BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0521800 Os08g0521800|AK067267
         (260 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31115.2  | chr4:15130243-15131847 FORWARD LENGTH=275          181   5e-46
AT5G04440.1  | chr5:1254957-1256624 FORWARD LENGTH=256             89   3e-18

>AT4G31115.2 | chr4:15130243-15131847 FORWARD LENGTH=275
          Length = 274

 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 83  FLRQPAGVESLLNTRALQSFAAVDEAPGANTFRCTLQSIGFLGFQVAPVLDLRVAPTCHD 142
           FL+ P+G+E+++N +ALQS+  VD++   +T+RCTL  +  + F+V PVL LRV PT  D
Sbjct: 107 FLKHPSGMEAVINAKALQSYHLVDDS--DDTYRCTLPKVQLMSFEVYPVLVLRVTPTQED 164

Query: 143 CTVEMLSCRFEGSGSVEQQNELFSAFMSNHITWKDDGEEPCLDIDVNLEVTLEVYTKPFS 202
           CTVE+LSC+ EGS  +E Q+E FSA M+N +TW  +  EP L++DV L VTLE+ T+PF+
Sbjct: 165 CTVELLSCKLEGSELLENQSERFSAIMTNCMTWNMEHPEPFLEVDVRLNVTLEISTRPFT 224

Query: 203 MLPLSAVETPGNLLMQGLLDRLVPLLGEQLLRDYHSWVQLQQQQ 246
           MLP+SAVE PGNL+MQ L+D LVPLL +QLL+DY  W++ QQ+ 
Sbjct: 225 MLPVSAVEAPGNLVMQTLVDTLVPLLLQQLLKDYDEWIKKQQRN 268



>AT5G04440.1 | chr5:1254957-1256624 FORWARD LENGTH=256
          Length = 255

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 15/162 (9%)

Query: 83  FLRQPAGVESLLNTRALQSFAAVDEAPGANTFRCTLQSIGFLGFQVAPVLDLRVAPTCHD 142
           ++  PA   S+L+   ++    VD+    NTFRC + +  F  F+V PVL +RV    + 
Sbjct: 89  YMSLPASQYSVLDAERIER---VDD----NTFRCYVYTFKFFNFEVCPVLLVRVEEQPNG 141

Query: 143 CTVEMLSCRFEGSGSVEQQNELFSAFMSNHI---TWKDDGEEPCLDIDVNLEVTLEVYTK 199
           C +++LSC+ EGS  V  QN+ F A M N +   + ++   E  +  D  +EV +E+   
Sbjct: 142 CCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITSDAVIEVNIEI--- 198

Query: 200 PFS--MLPLSAVETPGNLLMQGLLDRLVPLLGEQLLRDYHSW 239
           PF+  + P+ A+E  G  ++  +L  ++P    QL +DYH+W
Sbjct: 199 PFAFRVFPVGAIEATGTQVLDQILKLMLPRFLSQLSKDYHAW 240



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,211,251
Number of extensions: 151219
Number of successful extensions: 303
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)