BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0517100 Os08g0517100|AK112071
(95 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G16530.1 | chr1:5651470-5652839 REVERSE LENGTH=166 53 3e-08
AT2G30130.1 | chr2:12868740-12869684 FORWARD LENGTH=194 53 3e-08
AT1G31320.1 | chr1:11213107-11214032 FORWARD LENGTH=173 52 5e-08
AT3G26660.1 | chr3:9797136-9797610 REVERSE LENGTH=122 52 6e-08
AT3G26620.1 | chr3:9790628-9791112 FORWARD LENGTH=122 52 6e-08
AT5G66870.1 | chr5:26706621-26707562 FORWARD LENGTH=314 50 2e-07
AT2G28500.1 | chr2:12186603-12188110 REVERSE LENGTH=233 49 4e-07
AT5G63090.2 | chr5:25308723-25309283 REVERSE LENGTH=187 49 5e-07
AT3G27650.1 | chr3:10238731-10240346 FORWARD LENGTH=160 49 6e-07
AT1G65620.1 | chr1:24400146-24400745 FORWARD LENGTH=200 48 1e-06
AT2G23660.1 | chr2:10060242-10061177 REVERSE LENGTH=312 47 1e-06
AT1G07900.1 | chr1:2442624-2443631 FORWARD LENGTH=191 47 3e-06
AT3G50510.1 | chr3:18745002-18745598 REVERSE LENGTH=199 46 4e-06
>AT1G16530.1 | chr1:5651470-5652839 REVERSE LENGTH=166
Length = 165
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 60 DDCVLAPFFPASRPHRYACVHRVFGASNVARLLQ 93
D CV AP+FPA P+++A VH++FGASNV ++LQ
Sbjct: 28 DSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQ 61
>AT2G30130.1 | chr2:12868740-12869684 FORWARD LENGTH=194
Length = 193
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 61 DCVLAPFFPASRPHRYACVHRVFGASNVARLLQ 93
DC+ AP+FP PH++A VH+VFGASNV+++LQ
Sbjct: 22 DCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQ 54
>AT1G31320.1 | chr1:11213107-11214032 FORWARD LENGTH=173
Length = 172
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 61 DCVLAPFFPASRPHRYACVHRVFGASNVARLLQ 93
DCV +P+FPA P ++A VHRVFGASNV ++LQ
Sbjct: 27 DCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 59
>AT3G26660.1 | chr3:9797136-9797610 REVERSE LENGTH=122
Length = 121
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 28/33 (84%)
Query: 61 DCVLAPFFPASRPHRYACVHRVFGASNVARLLQ 93
DCV +P+FP + P ++ACVHR++GA NV+++LQ
Sbjct: 19 DCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQ 51
>AT3G26620.1 | chr3:9790628-9791112 FORWARD LENGTH=122
Length = 121
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 28/33 (84%)
Query: 61 DCVLAPFFPASRPHRYACVHRVFGASNVARLLQ 93
DCV +P+FP + P ++ACVHR++GA NV+++LQ
Sbjct: 19 DCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQ 51
>AT5G66870.1 | chr5:26706621-26707562 FORWARD LENGTH=314
Length = 313
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 60 DDCVLAPFFPASRPHRYACVHRVFGASNVARLL 92
+CV AP+FP +P ++A VH+VFGASNVA+LL
Sbjct: 20 QECVFAPYFPPDQPQKFAFVHKVFGASNVAKLL 52
>AT2G28500.1 | chr2:12186603-12188110 REVERSE LENGTH=233
Length = 232
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 60 DDCVLAPFFPASRPHRYACVHRVFGASNVARLLQ 93
D CVLAP+FP + P ++ HRVFGASN+ + LQ
Sbjct: 68 DKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 101
>AT5G63090.2 | chr5:25308723-25309283 REVERSE LENGTH=187
Length = 186
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 62 CVLAPFFPASRPHRYACVHRVFGASNVARLL 92
C+ AP+FP PH++A VH++FGASNV +LL
Sbjct: 26 CIFAPYFPPEEPHKFANVHKIFGASNVTKLL 56
>AT3G27650.1 | chr3:10238731-10240346 FORWARD LENGTH=160
Length = 159
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 61 DCVLAPFFPASRPHRYACVHRVFGASNVARLL 92
DCV AP+FP P ++A VHR+FGASNV+++L
Sbjct: 53 DCVFAPYFPPEEPTKFANVHRIFGASNVSKIL 84
>AT1G65620.1 | chr1:24400146-24400745 FORWARD LENGTH=200
Length = 199
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 61 DCVLAPFFPASRPHRYACVHRVFGASNVARLL 92
+CV AP+FP +P ++A VH+VFGASNV +LL
Sbjct: 23 ECVFAPYFPPDQPQKFANVHKVFGASNVTKLL 54
>AT2G23660.1 | chr2:10060242-10061177 REVERSE LENGTH=312
Length = 311
Score = 47.4 bits (111), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 61 DCVLAPFFPASRPHRYACVHRVFGASNVARLL 92
+CV AP+FP + P ++ VHRVFGASNV ++L
Sbjct: 19 ECVFAPYFPPTNPQKFIFVHRVFGASNVTKIL 50
>AT1G07900.1 | chr1:2442624-2443631 FORWARD LENGTH=191
Length = 190
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 62 CVLAPFFPASRPHRYACVHRVFGASNVARLLQ 93
CVLAP+FP + P ++ HRVFGASN+ + LQ
Sbjct: 48 CVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79
>AT3G50510.1 | chr3:18745002-18745598 REVERSE LENGTH=199
Length = 198
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 60 DDCVLAPFFPASRPHRYACVHRVFGASNVARLL 92
+DCV AP+FP+++ Y VH+VFGAS+VA L+
Sbjct: 25 EDCVFAPYFPSTKLDNYEAVHKVFGASHVATLI 57
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,472,088
Number of extensions: 27925
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 14
Length of query: 95
Length of database: 11,106,569
Length adjustment: 65
Effective length of query: 30
Effective length of database: 9,324,529
Effective search space: 279735870
Effective search space used: 279735870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)