BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0508600 Os08g0508600|AK105183
         (198 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27990.1  | chr5:10017358-10018265 FORWARD LENGTH=185           92   2e-19
AT3G22510.1  | chr3:7973544-7974087 FORWARD LENGTH=125             84   6e-17

>AT5G27990.1 | chr5:10017358-10018265 FORWARD LENGTH=185
          Length = 184

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 27  VFGRWTALQMAVENQWGGRDSRAKADQLAESILSWFANSKGK-HYYEDLVDMMYDTVSKS 85
           +  RWTA++ AVEN WGGRDS+AKA++   ++  +F  SK      E L D++ D     
Sbjct: 22  ILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDPVKDIEKLGDLL-DKGLDE 80

Query: 86  FNADFEDGSVEEVAEQLLIMHEECLQSNYSSVEKLRNSRAQGNAVSQSRKMVVXXXXXXX 145
            N   EDGSV+EVA  L+ ++E+C   NY  +E+LR + +Q +A      + V       
Sbjct: 81  LNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQTSA----SVVKVSNGDDEE 136

Query: 146 XXXXXXXXXXPSMMDNEAGSAEKMAVDEPKPSKPVPDADGWTTVPPRRGRGK 197
                       M+D      E M VDE     PV D DGWT V  R+ +GK
Sbjct: 137 SDDEDDDQTTDMMVDASNQKQEAMPVDE-----PVAD-DGWTVVSSRKNKGK 182



>AT3G22510.1 | chr3:7973544-7974087 FORWARD LENGTH=125
          Length = 124

 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 27  VFGRWTALQMAVENQWGGRDSRAKADQLAESILSWFANSKGKHYYEDLVDMMYDTVSKSF 86
           +  RW  LQMAV+NQWGG DS  K+ +LA ++    + S      E++ +++++++  SF
Sbjct: 38  LLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQSNVI-TVEEIENLLHESLLLSF 96

Query: 87  NADFEDGSVEEVAEQLLIMHEECLQ 111
           N + EDGS+EEVAEQL+I+HEE L+
Sbjct: 97  NTEIEDGSIEEVAEQLMILHEEHLR 121



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.126    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,341,410
Number of extensions: 114604
Number of successful extensions: 315
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)