BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0500000 Os08g0500000|AK058215
(329 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G56280.1 | chr5:22783617-22785530 REVERSE LENGTH=318 464 e-131
AT4G26430.1 | chr4:13355229-13357326 FORWARD LENGTH=318 452 e-127
AT5G05780.1 | chr5:1735862-1738176 FORWARD LENGTH=309 92 5e-19
AT3G11270.1 | chr3:3528989-3531317 FORWARD LENGTH=311 88 6e-18
>AT5G56280.1 | chr5:22783617-22785530 REVERSE LENGTH=318
Length = 317
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/310 (72%), Positives = 249/310 (80%), Gaps = 8/310 (2%)
Query: 27 LTFKLHPLVIVNVSDHHTRVKXX-------XXXXXXXXXXXXXXXQPPRVFGCVIGVQRG 79
LTFKLHPLVIVN+SDH+TRVK Q PRV+GCVIGVQRG
Sbjct: 9 LTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRG 68
Query: 80 RTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHK 139
RTVEIFNSFEL+ DP + TLDR+FLEKKQELYKKVFPDFY+LGWYSTGSD ++DM IHK
Sbjct: 69 RTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIHK 128
Query: 140 ALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSPQLIFVRANYTIETVEAERI 199
ALMDINESPVY+LLNPAIN +QKDLPVTIYESELHVIDG PQLIF +YTIETVEAERI
Sbjct: 129 ALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTIETVEAERI 188
Query: 200 SVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQYLVSMQKGDMPLDNXXX 259
SVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSR+RV++Q L +MQKGD DN
Sbjct: 189 SVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDNSVL 248
Query: 260 XXXXXXXXXXPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSSTMNELVEKFNATYERST 319
PAMESE+FQD+FLMEYND LL+TYLAM TNCSS MNE+V+KFN Y+R+T
Sbjct: 249 RQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNT 308
Query: 320 ARRGGRGAFM 329
RRGGR AFM
Sbjct: 309 -RRGGRTAFM 317
>AT4G26430.1 | chr4:13355229-13357326 FORWARD LENGTH=318
Length = 317
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/310 (70%), Positives = 246/310 (79%), Gaps = 8/310 (2%)
Query: 27 LTFKLHPLVIVNVSDHHTRVK-------XXXXXXXXXXXXXXXXXQPPRVFGCVIGVQRG 79
LTFKLHPLV++N+SDH TRVK Q PRV+GCVIG+QRG
Sbjct: 9 LTFKLHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIGLQRG 68
Query: 80 RTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHK 139
RTVEIFNSFEL+ DP TLDR+FLEKKQELYKKVFPDFYVLGWYSTGSD ++DM IHK
Sbjct: 69 RTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIHK 128
Query: 140 ALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSPQLIFVRANYTIETVEAERI 199
ALMDINESPVY+LLNPAIN +QKDLPVTIYESE HVIDG PQ IFV +YTIETVEAERI
Sbjct: 129 ALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYTIETVEAERI 188
Query: 200 SVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQYLVSMQKGDMPLDNXXX 259
SVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSR+RV++Q++V+MQKGD P +N
Sbjct: 189 SVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGDKPCENSVL 248
Query: 260 XXXXXXXXXXPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSSTMNELVEKFNATYERST 319
PA ESEKF ++FLMEYND LLM+YLAM TNC+S MNE+V+KFN Y++ +
Sbjct: 249 RQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKHS 308
Query: 320 ARRGGRGAFM 329
RRGGR AFM
Sbjct: 309 -RRGGRTAFM 317
>AT5G05780.1 | chr5:1735862-1738176 FORWARD LENGTH=309
Length = 308
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 137/299 (45%), Gaps = 32/299 (10%)
Query: 31 LHPLVIVNVSDHHTRVKXXXXXXXXXXXXXXXXXQPPRVFGCVIGVQRGRTVEIFNSFEL 90
+HPLV++++ DH+ RV RV G ++G V++ NS+ +
Sbjct: 19 VHPLVLLSIVDHYNRV---------------AKDSSKRVVGVLLGSSSRGVVDVTNSYAV 63
Query: 91 VL-----DPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMDIN 145
DP LD + E ++K++ +V+GWYSTG +R+ D+ +H
Sbjct: 64 PFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYV 123
Query: 146 ESPVYLLLNPAINLSQKDLPVTIYESELHVIDGS---PQLIFVRANYTIETVEAERISVD 202
+PV ++++ + + +P Y + V + + Q +FV + I E E I V+
Sbjct: 124 PNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVE 181
Query: 203 HVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQYLVSMQKGDMPLDNXXXXX 261
H+ +K + + AT++ A LT A+K L++R+R I YL + +G +PL++
Sbjct: 182 HLLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRSYLDLVIEGKLPLNHEILYH 237
Query: 262 XXXXXXXXPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSSTMNELVEK--FNATYERS 318
P + + F ++ ND +L+ YL+ ++ L+ N +E++
Sbjct: 238 LQDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLINNKLLNKEHEKA 296
>AT3G11270.1 | chr3:3528989-3531317 FORWARD LENGTH=311
Length = 310
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 136/299 (45%), Gaps = 32/299 (10%)
Query: 31 LHPLVIVNVSDHHTRVKXXXXXXXXXXXXXXXXXQPPRVFGCVIGVQRGRTVEIFNSFEL 90
+HPLV++++ DH+ RV RV G ++G TV++ NS+ +
Sbjct: 19 VHPLVLLSIVDHYNRV---------------AKDTSKRVVGVLLGSSSRGTVDVTNSYAV 63
Query: 91 VL-----DPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMDIN 145
D LD + E ++K++ +++GWYSTG +R+ D+ +H
Sbjct: 64 PFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYV 123
Query: 146 ESPVYLLLNPAINLSQKDLPVTIYESELHVIDGS---PQLIFVRANYTIETVEAERISVD 202
+PV ++++ + + +P Y + V + + Q +FV I E E I V+
Sbjct: 124 PNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVE 181
Query: 203 HVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQYLVSMQKGDMPLDNXXXXX 261
H+ +K + + AT++ A LT A+K L++R+R I YL + +G +PL++
Sbjct: 182 HLLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRTYLDLVIEGKLPLNHEILYH 237
Query: 262 XXXXXXXXPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSSTMNELVEK--FNATYERS 318
P + + F ++ ND +L+ YL+ ++ L+ N +E++
Sbjct: 238 LQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIALHSLINNKLLNKEHEKA 296
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,989,521
Number of extensions: 220587
Number of successful extensions: 462
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 5
Length of query: 329
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,392,385
Effective search space: 1930248550
Effective search space used: 1930248550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)