BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0485900 Os08g0485900|AK110716
(324 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39970.1 | chr4:18536678-18538429 REVERSE LENGTH=317 388 e-108
AT3G48420.1 | chr3:17929743-17931551 FORWARD LENGTH=320 158 5e-39
AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056 84 9e-17
AT5G45170.1 | chr5:18270555-18273129 REVERSE LENGTH=373 63 2e-10
AT2G38740.1 | chr2:16194639-16195995 REVERSE LENGTH=245 59 2e-09
AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380 59 5e-09
>AT4G39970.1 | chr4:18536678-18538429 REVERSE LENGTH=317
Length = 316
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/239 (75%), Positives = 206/239 (86%), Gaps = 4/239 (1%)
Query: 70 LIFDCDGVILESEHLHRQAYNDAFAHFGVSCEPASAAATDAPLYWDEAFYDDLQNRIGGG 129
LIFDCDGVILESE+LHRQAYNDAF+HF V C P+S+ + D W FYD QN +GGG
Sbjct: 66 LIFDCDGVILESENLHRQAYNDAFSHFDVRCPPSSSESLD----WSLEFYDKFQNLVGGG 121
Query: 130 KPKMRWYFGENGWPTSKIFETPPSSDSDKEKLVDIIQDWKTERYKEILKSGTVKPRPGVL 189
KPKMRWYF ENGWPTS IF++PP +D D+ KL+D +QDWKTERYKEI+KSG+V+PRPGV+
Sbjct: 122 KPKMRWYFKENGWPTSTIFDSPPQNDDDRAKLIDTLQDWKTERYKEIIKSGSVEPRPGVI 181
Query: 190 RLMDEVKGAGIKLAVCSAATKSSVIMCLENLIGLERFNGLDCFLAGDDVKLKKPDPSIYI 249
RLMDE K AG KLAVCSAATKSSVI+CLENLI +ERF GLDCFLAGDDVK KKPDPSIYI
Sbjct: 182 RLMDEAKAAGKKLAVCSAATKSSVILCLENLIDIERFQGLDCFLAGDDVKEKKPDPSIYI 241
Query: 250 TAAEKLGVQSQNCLVVEDSVIGLQAAKGAGMSCIITYTPSTANQDFSDAIATYPDLSNV 308
TAAEKLGV ++CLVVEDSVIGLQAA AGMSC+ITYT ST++Q+F+DAIA YPDLSNV
Sbjct: 242 TAAEKLGVSVKDCLVVEDSVIGLQAATKAGMSCVITYTSSTSDQNFNDAIAVYPDLSNV 300
>AT3G48420.1 | chr3:17929743-17931551 FORWARD LENGTH=320
Length = 319
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 138/234 (58%), Gaps = 20/234 (8%)
Query: 70 LIFDCDGVILESEH-LHRQAYNDAFAHFGVSCEPASAAATDAPLYWDEAFYDDLQNRIGG 128
L+FDCDGV++++E HR ++ND F D + WD Y +L +IGG
Sbjct: 79 LLFDCDGVLVDTEKDGHRISFNDTFKE------------RDLNVTWDVDLYGELL-KIGG 125
Query: 129 GKPKMRWYFGENGWPTSKIFETPPSSDSDKEKLVDIIQDWKTERYKEILKSGTVKPRPGV 188
GK +M YF + GWP E P ++++++ + + KTE + +++ + RPGV
Sbjct: 126 GKERMTAYFNKVGWP-----EKAPKDEAERKEFIAGLHKQKTELFMVLIEKKLLPLRPGV 180
Query: 189 LRLMDEVKGAGIKLAVCSAATKSSVIMCLENLIGLERFNGLDCFLAGDDVKLKKPDPSIY 248
+L+D+ G+K+AVCS + + +V + L+G ER + F AGD V KKPDP+IY
Sbjct: 181 AKLVDQALTNGVKVAVCSTSNEKAVSAIVSCLLGPERAEKIKIF-AGDVVPKKKPDPAIY 239
Query: 249 ITAAEKLGVQSQNCLVVEDSVIGLQAAKGAGMSCIITYTPSTANQDFSDAIATY 302
AAE LGV C+VVEDS IGL AAK AGM+CI+T + TA++DF +A A +
Sbjct: 240 NLAAETLGVDPSKCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFENADAVF 293
>AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056
Length = 1055
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 98/223 (43%), Gaps = 42/223 (18%)
Query: 70 LIFDCDGVILESEHLHRQAYNDAFAHFGVSCEPASAAATDAPLYWDEAFYDDLQNRIGGG 129
++FD DGV+ SE L R+A D F GV E DD +G G
Sbjct: 77 VLFDMDGVLCNSEDLSRRAAVDVFTEMGV-----------------EVTVDDFVPFMGTG 119
Query: 130 KPKMRWYFGENGWPTSKIFETPPSSDSDKEKLVDIIQDWKTERYKEILKSGTVKPR---- 185
+ K + G K F+ D ER+ EI KP
Sbjct: 120 EAK--FLGGVASVKEVKGFD----------------PDAAKERFFEIYLDKYAKPESGIG 161
Query: 186 -PGVLRLMDEVKGAGIKLAVCSAATKSSVIMCLENLIGLERFNGLDCFLAGDDVKLKKPD 244
PG L L+ E K G+K+AV S+A + V L+ GL D ++ D + KP
Sbjct: 162 FPGALELVTECKNKGLKVAVASSADRIKVDANLK-AAGLS-LTMFDAIVSADAFENLKPA 219
Query: 245 PSIYITAAEKLGVQSQNCLVVEDSVIGLQAAKGAGMSCIITYT 287
P I++ AA+ LGV + C+V+ED++ G+QAA+ A M CI T
Sbjct: 220 PDIFLAAAKILGVPTSECVVIEDALAGVQAAQAANMRCIAVKT 262
>AT5G45170.1 | chr5:18270555-18273129 REVERSE LENGTH=373
Length = 372
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 109/287 (37%), Gaps = 76/287 (26%)
Query: 70 LIFDCDGVILESEHLHRQAYNDAFAHFGVSCEPASAAATDAPLYWDEAFYDDLQNRIGGG 129
+I + D V++++ +RQA+N AF G+ C W E Y DL +
Sbjct: 81 VILEVDRVMIDTWSSNRQAFNVAFQKLGLDCA-----------NWPEPVYSDLLRKGAAD 129
Query: 130 KPKM-RWYFGENGWPTSKIFETPPSSDSDKEKLVDIIQDWKTERYKEILKSGTVKPRPGV 188
+ KM YF + GWP+S P+ S+K V + K E L S ++ R GV
Sbjct: 130 EEKMLLLYFNQIGWPSSL-----PT--SEKASFVKSVLREKKNAMDEFLISKSLPLRSGV 182
Query: 189 LRLMDEVKGAGIKLAVCSAATKS--SVIMCLENLIGLERF-------------------- 226
+D + +A+ +A KS V + + ++G ER
Sbjct: 183 QEFIDNAYAEKVPVAIVTAYCKSGDKVALSIVEMLGQERLPNVKVIGDNEVEQSMYGQLV 242
Query: 227 --NGLDCFLAGDDVKLKKPDPS-------------------IYITAAEKL---------- 255
G+ L VK K S I T++E+L
Sbjct: 243 LGKGVSSSLEEQLVKEVKKAASAEKQRIAEEVASMLKLSVDIDTTSSERLEKIVVALRAA 302
Query: 256 ----GVQSQNCLVVEDSVIGLQAAKGAGMSCIITYTPSTANQDFSDA 298
G+ NC++V S G+ AAK GM C++ + TA +F A
Sbjct: 303 AEHIGLPVNNCVLVAGSQPGVSAAKMIGMPCVVMRSSLTARGEFPSA 349
>AT2G38740.1 | chr2:16194639-16195995 REVERSE LENGTH=245
Length = 244
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 33/214 (15%)
Query: 70 LIFDCDGVILESEHLHRQAYNDAFAHFGVSCEPASAAATDAPLYWDEAFYDDLQNRIGGG 129
++FD DG + +S+ +H A+ + G + P+ DE F+ ++N G
Sbjct: 25 ILFDVDGTLCDSDPIHLIAFQELLQEIGFN--------NGVPI--DEKFF--VENIAGKH 72
Query: 130 KPKMRWYFGENGWPTSKIFETPPSSDSDKEKLVDIIQDWKTERYKEILKSGTVKPRPGVL 189
++ P S K D K Y++I+ + +KP G++
Sbjct: 73 NSEIALLLF-------------PDDVSRGLKFCD----EKEALYRKIV-AEKIKPLDGLI 114
Query: 190 RLMDEVKGAGIKLAVCSAATKSSVIMCLENLIGLERFNGLDCFLAGDDVKLKKPDPSIYI 249
+L ++ G+K A + A K + + + L GL F + G + + KP P Y+
Sbjct: 115 KLTKWIEDRGLKRAAVTNAPKENAELMISKL-GLTDF--FQAVILGSECEFPKPHPGPYL 171
Query: 250 TAAEKLGVQSQNCLVVEDSVIGLQAAKGAGMSCI 283
A E L V ++ LV EDS+ G++A AGM I
Sbjct: 172 KALEVLNVSKEHTLVFEDSISGIKAGVAAGMPVI 205
>AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380
Length = 379
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 182 VKPRPGVLRLMDEVKGAGIKLAVCSAATKSSVIMCLENLIGLERFNGLDCF---LAGDDV 238
+K PG RL+ +K G+ +A+ S ++++++ + G + +CF + D+V
Sbjct: 92 IKSLPGANRLIRHLKCHGVPVALASNSSRANIESKISYHEGWK-----ECFSVIVGSDEV 146
Query: 239 KLKKPDPSIYITAAEKLGVQSQNCLVVEDSVIGLQAAKGAGMSCIITYTPSTANQ 293
KP P I++ AA++L +CLV+EDSV G+ A K AG I PS Q
Sbjct: 147 SKGKPSPDIFLEAAKRLKKDPADCLVIEDSVPGVMAGKAAGTKVIA--VPSLPKQ 199
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,183,775
Number of extensions: 261577
Number of successful extensions: 601
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 6
Length of query: 324
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,392,385
Effective search space: 1888286625
Effective search space used: 1888286625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)