BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0481100 Os08g0481100|J043031N12
(434 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G40020.1 | chr4:18553453-18555300 REVERSE LENGTH=616 129 5e-30
AT1G65010.1 | chr1:24149543-24154024 FORWARD LENGTH=1346 59 6e-09
AT5G16730.1 | chr5:5497890-5500775 FORWARD LENGTH=854 50 2e-06
AT3G02930.1 | chr3:655306-658319 FORWARD LENGTH=807 49 5e-06
>AT4G40020.1 | chr4:18553453-18555300 REVERSE LENGTH=616
Length = 615
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 170/314 (54%), Gaps = 50/314 (15%)
Query: 95 SEKKLLVSLGAQTKQLEQTKVSLEEAKLEIASLKDNKKSSEAFSALSSNPSQPARNLRRR 154
+EKKLL S Q+++LE+TK +EE+K+EIASLK+ K + S SS + +++
Sbjct: 63 AEKKLLDSFKDQSRELEETKALVEESKVEIASLKE-KIDTSYNSQDSSEEDEDDSSVQDF 121
Query: 155 GIMSF---------SFADPGEV-------------ETWSLQRELKLAVEAEEKCKKAMDD 192
I S S A E E S++ ELK A +AE +KAMDD
Sbjct: 122 DIESLKTEMESTKESLAQAHEAAQASSLKVSELLEEMKSVKNELKSATDAEMTNEKAMDD 181
Query: 193 LAIALKEQTTDARDAKAKLSLAQSELTNARTEMENSK----------ALLKNTEEKLQVA 242
LA+ALKE TD K KL + ++EL AR E + K LLKNT E+L++
Sbjct: 182 LALALKEVATDCSQTKEKLVIVETELEAARIESQQWKDKYEEVRKDAELLKNTSERLRI- 240
Query: 243 LEEAAQLKFESDELAAASKEKERGLVDCIKMFEGDLIKAKEENNKLIES-------QRVI 295
E++E A KE V CIK E + +ENN+L+E+ +
Sbjct: 241 ---------EAEESLLAWNGKESVFVTCIKRGEDEKNSLLDENNRLLEALVAAENLSKKA 291
Query: 296 RDENSRLREMLKHAVCEANVAKESLEIARAENSQLKEDISEKENTLQSIIQDYESLKVSE 355
++EN ++R++LK A+ EANVAKE+ IARAENS LK+ + +KE LQ +++ E +KV+E
Sbjct: 292 KEENHKVRDILKQAINEANVAKEAAGIARAENSNLKDALLDKEEELQFALKEIERVKVNE 351
Query: 356 SAAQSSIGELKDMI 369
+ A +I +LK M+
Sbjct: 352 AVANDNIKKLKKML 365
>AT1G65010.1 | chr1:24149543-24154024 FORWARD LENGTH=1346
Length = 1345
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 118/234 (50%), Gaps = 22/234 (9%)
Query: 183 EEKCKKAMDDLAIALKEQTTDARDAKAKLSLAQSELTNARTEMENSKALLKNTEEKLQVA 242
EEK KK M+ L +AL+E +T++ +AKA L + Q EL N +++++ K K T EK +
Sbjct: 449 EEKSKKDMESLTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKETNEKYEKM 508
Query: 243 LEEA-------------AQLKFESDELAAASKEKERGLVDCIKMFEGDLIKAKEENNKLI 289
LE+A Q +FE+ + A ++KE L+ C+K E + ++EE ++L+
Sbjct: 509 LEDARNEIDSLKSTVDSIQNEFENSK--AGWEQKELHLMGCVKKSEEENSSSQEEVSRLV 566
Query: 290 -------ESQRVIRDENSRLREMLKHAVCEANVAKESLEIARAENSQLKEDISEKENTLQ 342
E ++E + L+ LK A E +E+L A+AE+ +LKE + +KE L+
Sbjct: 567 NLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKAESMKLKESLLDKEEDLK 626
Query: 343 SIIQDYESLKVSESAAQSSIGELKDMIDAMFXXXXXXXXXXXXPRDTKGNEVYY 396
++ + SL+ E + I EL + +++ + KG E +
Sbjct: 627 NVTAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQSITQEAEELKGREAAH 680
>AT5G16730.1 | chr5:5497890-5500775 FORWARD LENGTH=854
Length = 853
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 26/203 (12%)
Query: 189 AMDDLAIALKEQTTDARDAKAKLSLAQSELTNARTEMENSKALLKNTEEKLQVALEEAAQ 248
AM+ LA AL E +++ R+ K KL L+Q + T++++ K ++K T EK + L+EA
Sbjct: 465 AMESLASALHEVSSEGRELKEKL-LSQGD-HEYETQIDDLKLVIKATNEKYENMLDEA-- 520
Query: 249 LKFESDELAAASKE--------------KERGLVDCIKMFEGDLIKAKEENNKLIESQRV 294
+ E D L +A ++ KE LV+ +K E D+ +E N+L +
Sbjct: 521 -RHEIDVLVSAVEQTKKHFESSKKDWEMKEANLVNYVKKMEEDVASMGKEMNRLDNLLKR 579
Query: 295 IRDE-------NSRLREMLKHAVCEANVAKESLEIARAENSQLKEDISEKENTLQSIIQD 347
+E ++ ++ LK E +E+L A+AE+ +LKE++ +KE Q++I +
Sbjct: 580 TEEEADAAWKKEAQTKDSLKEVEEEIVYLQETLGEAKAESMKLKENLLDKETEFQNVIHE 639
Query: 348 YESLKVSESAAQSSIGELKDMID 370
E LK E + I EL +++
Sbjct: 640 NEDLKAKEDVSLKKIEELSKLLE 662
>AT3G02930.1 | chr3:655306-658319 FORWARD LENGTH=807
Length = 806
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 26/186 (13%)
Query: 189 AMDDLAIALKEQTTDARDAKAKLSLAQSELTNARTEMENSKALLKNTEEKLQVALEEAAQ 248
AM+ LA AL E ++++R+ K KL L++ + N T++E+ K ++K T K + L+EA
Sbjct: 454 AMESLASALHEVSSESRELKEKL-LSRGD-QNYETQIEDLKLVIKATNNKYENMLDEA-- 509
Query: 249 LKFESDELAAASKE--------------KERGLVDCIKMFEGDLIKAKEENNKLIESQRV 294
+ E D L A ++ +E GLV+ +K F+ ++ +E N+L +
Sbjct: 510 -RHEIDVLVNAVEQTKKQFESAMVDWEMREAGLVNHVKEFDEEVSSMGKEMNRLGNLVKR 568
Query: 295 IRDE-------NSRLREMLKHAVCEANVAKESLEIARAENSQLKEDISEKENTLQSIIQD 347
++E S++R+ LK E +E+L A+AE +LK + +KE QSI+ +
Sbjct: 569 TKEEADASWEKESQMRDCLKEVEDEVIYLQETLREAKAETLKLKGKMLDKETEFQSIVHE 628
Query: 348 YESLKV 353
+ L+V
Sbjct: 629 NDELRV 634
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.307 0.122 0.310
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,503,723
Number of extensions: 286050
Number of successful extensions: 2358
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 2280
Number of HSP's successfully gapped: 56
Length of query: 434
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 333
Effective length of database: 8,337,553
Effective search space: 2776405149
Effective search space used: 2776405149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 113 (48.1 bits)