BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0478700 Os08g0478700|AK058489
(65 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22500.1 | chr2:9563531-9564472 REVERSE LENGTH=314 100 3e-22
AT4G24570.1 | chr4:12686546-12687487 FORWARD LENGTH=314 87 2e-18
AT5G09470.1 | chr5:2949241-2950513 REVERSE LENGTH=338 78 9e-16
AT5G58970.1 | chr5:23808642-23811018 REVERSE LENGTH=306 65 9e-12
AT3G54110.1 | chr3:20038890-20040996 FORWARD LENGTH=307 62 5e-11
AT1G14140.1 | chr1:4838131-4839602 REVERSE LENGTH=306 52 6e-08
AT4G01100.2 | chr4:477411-479590 FORWARD LENGTH=367 49 4e-07
AT5G46800.1 | chr5:18988779-18989810 REVERSE LENGTH=301 45 9e-06
>AT2G22500.1 | chr2:9563531-9564472 REVERSE LENGTH=314
Length = 313
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 51/56 (91%)
Query: 10 PPYSGAIDCALKTVRSEGVMALYKGFIPTVSRQGPFTVVLFVTLEQVRKVFNGVEF 65
PPY GA+DCALKTV++EG+M+LYKGFIPTVSRQ PFTVVLFVTLEQV+K+F +F
Sbjct: 258 PPYKGAVDCALKTVKAEGIMSLYKGFIPTVSRQAPFTVVLFVTLEQVKKLFKDYDF 313
>AT4G24570.1 | chr4:12686546-12687487 FORWARD LENGTH=314
Length = 313
Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 44/49 (89%)
Query: 12 YSGAIDCALKTVRSEGVMALYKGFIPTVSRQGPFTVVLFVTLEQVRKVF 60
Y GA DCA+KTV++EG MALYKGF+PTV RQGPFTVVLFVTLEQVRK+
Sbjct: 262 YDGAWDCAVKTVKAEGAMALYKGFVPTVCRQGPFTVVLFVTLEQVRKLL 310
>AT5G09470.1 | chr5:2949241-2950513 REVERSE LENGTH=338
Length = 337
Score = 78.2 bits (191), Expect = 9e-16, Method: Composition-based stats.
Identities = 33/54 (61%), Positives = 42/54 (77%)
Query: 12 YSGAIDCALKTVRSEGVMALYKGFIPTVSRQGPFTVVLFVTLEQVRKVFNGVEF 65
Y G +DCA+K V EG MALYKG +PT +RQGPFT++LF+TLEQVR + V+F
Sbjct: 284 YGGPLDCAVKMVAEEGPMALYKGLVPTATRQGPFTMILFLTLEQVRGLLKDVKF 337
>AT5G58970.1 | chr5:23808642-23811018 REVERSE LENGTH=306
Length = 305
Score = 64.7 bits (156), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 12 YSGAIDCALKTVRSEGVMALYKGFIPTVSRQGPFTVVLFVTLEQVRKVF 60
Y +DC +KT+++EG+MA YKGF+P +R G + ++F+TLEQV+KVF
Sbjct: 250 YRNTVDCFIKTMKTEGIMAFYKGFLPNFTRLGTWNAIMFLTLEQVKKVF 298
>AT3G54110.1 | chr3:20038890-20040996 FORWARD LENGTH=307
Length = 306
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 12 YSGAIDCALKTVRSEGVMALYKGFIPTVSRQGPFTVVLFVTLEQVRK 58
Y G IDC +KT++S+G MA YKGFIP R G + V++F+TLEQ +K
Sbjct: 249 YKGTIDCFVKTLKSDGPMAFYKGFIPNFGRLGSWNVIMFLTLEQAKK 295
>AT1G14140.1 | chr1:4838131-4839602 REVERSE LENGTH=306
Length = 305
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 12 YSGAIDCALKTVRSEGVMALYKGFIPTVSRQGPFTVVLFVTLEQVR 57
Y + DC +KTV+ EG+ AL+KGF PT +R GP+ V +V+ E+ R
Sbjct: 252 YRNSYDCLVKTVKFEGIRALWKGFFPTWARLGPWQFVFWVSYEKFR 297
>AT4G01100.2 | chr4:477411-479590 FORWARD LENGTH=367
Length = 366
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 12 YSGAIDCALKTVRSEGVMALYKGFIPTVSRQGPFTVVLFVTLEQVRKVFNGVEF 65
Y+G +D KTVR EG ALYKG +P + P + FVT E V+ V GVEF
Sbjct: 310 YTGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDVL-GVEF 362
>AT5G46800.1 | chr5:18988779-18989810 REVERSE LENGTH=301
Length = 300
Score = 44.7 bits (104), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 8 RRPPYSGAIDCALKTVRSEGVMALYKGFIPTVSRQGPFTVVLFVTLEQVR 57
+ P Y+G++D K ++SEGV LYKGF P ++R P F+ E R
Sbjct: 247 KNPRYTGSMDAFRKILKSEGVKGLYKGFGPAMARSVPANAACFLAYEMTR 296
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.143 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,300,955
Number of extensions: 34455
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 9
Length of query: 65
Length of database: 11,106,569
Length adjustment: 38
Effective length of query: 27
Effective length of database: 10,064,761
Effective search space: 271748547
Effective search space used: 271748547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)