BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0477500 Os08g0477500|J100084C06
(108 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26560.1 | chr2:11293912-11295708 REVERSE LENGTH=408 142 2e-35
AT4G37070.2 | chr4:17464916-17467058 REVERSE LENGTH=415 137 1e-33
AT4G37060.2 | chr4:17461573-17463704 REVERSE LENGTH=436 124 1e-29
AT4G37050.1 | chr4:17457261-17459642 REVERSE LENGTH=429 99 3e-22
AT5G43590.1 | chr5:17509368-17511477 REVERSE LENGTH=402 99 6e-22
AT3G54950.1 | chr3:20359076-20360774 REVERSE LENGTH=489 92 5e-20
AT2G39220.1 | chr2:16375055-16376663 REVERSE LENGTH=500 90 2e-19
AT4G29800.2 | chr4:14590862-14592536 REVERSE LENGTH=527 87 2e-18
AT3G63200.1 | chr3:23346140-23347379 FORWARD LENGTH=385 75 5e-15
>AT2G26560.1 | chr2:11293912-11295708 REVERSE LENGTH=408
Length = 407
Score = 142 bits (359), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 76/89 (85%)
Query: 19 KMVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLT 78
+VT+LSIDGGG+RG+IPA IL FLE ELQKLDG +AR+ADYFDV+AGTSTGGL+TAMLT
Sbjct: 17 NLVTILSIDGGGIRGLIPAVILGFLESELQKLDGEEARLADYFDVIAGTSTGGLVTAMLT 76
Query: 79 APNENNRPLFAADELAKFYIEHSPSIFPQ 107
APN+ RPLFAA E+ FY+E P IFPQ
Sbjct: 77 APNKEGRPLFAASEIKDFYLEQCPKIFPQ 105
>AT4G37070.2 | chr4:17464916-17467058 REVERSE LENGTH=415
Length = 414
Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 75/88 (85%)
Query: 20 MVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLTA 79
+VT+LS+DGGGVRGII ILAFLEK+LQ+LDG +AR+ADYFDV+AGTSTGGL+TAMLT
Sbjct: 18 LVTILSLDGGGVRGIIAGVILAFLEKQLQELDGEEARLADYFDVIAGTSTGGLVTAMLTV 77
Query: 80 PNENNRPLFAADELAKFYIEHSPSIFPQ 107
P+E RP FAA ++ FY+EH P IFPQ
Sbjct: 78 PDETGRPHFAAKDIVPFYLEHCPKIFPQ 105
>AT4G37060.2 | chr4:17461573-17463704 REVERSE LENGTH=436
Length = 435
Score = 124 bits (310), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 75/119 (63%), Gaps = 31/119 (26%)
Query: 20 MVTVLSIDGGGVRGIIPATILAFLEKELQ------------------------------- 48
+VT+LS+DGGGVRGII ILA+LEK+LQ
Sbjct: 8 LVTILSLDGGGVRGIIAGVILAYLEKQLQVYIYINFSRMQVTKIVDTYDRIITRHANFVV 67
Query: 49 KLDGPDARIADYFDVVAGTSTGGLLTAMLTAPNENNRPLFAADELAKFYIEHSPSIFPQ 107
+LDG R+ADYFDV+AGTSTGGL+TAMLTAP+EN RP FAA E+ FY+EH P IFPQ
Sbjct: 68 ELDGEHVRVADYFDVIAGTSTGGLVTAMLTAPDENGRPRFAAKEIVPFYLEHCPKIFPQ 126
>AT4G37050.1 | chr4:17457261-17459642 REVERSE LENGTH=429
Length = 428
Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 78/96 (81%), Gaps = 7/96 (7%)
Query: 19 KMVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLT 78
++VT+LSIDGGG+RGIIP TILA+LE +LQ+LDG +AR+ DYFDV++GTSTGGL+ AMLT
Sbjct: 33 QLVTILSIDGGGIRGIIPGTILAYLESQLQELDGEEARLVDYFDVISGTSTGGLIVAMLT 92
Query: 79 APNE-------NNRPLFAADELAKFYIEHSPSIFPQ 107
A ++ +NRPLF A E+ FY++HSP IFPQ
Sbjct: 93 AQDQSGGHSRNSNRPLFEAKEIVPFYLKHSPKIFPQ 128
>AT5G43590.1 | chr5:17509368-17511477 REVERSE LENGTH=402
Length = 401
Score = 98.6 bits (244), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 20 MVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDA-RIADYFDVVAGTSTGGLLTAMLT 78
+VT+LS+DGGGVRGII ILA LEK LQ++D ++ R+ADYFDV+AGTSTGGL+TAMLT
Sbjct: 13 LVTILSLDGGGVRGIIGGVILANLEKHLQEIDNDESVRLADYFDVIAGTSTGGLMTAMLT 72
Query: 79 APNENNRPLFAADELAKFYIEHSPSIF 105
APN++ RPL+AA ++ FY+E SP IF
Sbjct: 73 APNDSGRPLYAAKDIVPFYLEESPKIF 99
>AT3G54950.1 | chr3:20359076-20360774 REVERSE LENGTH=489
Length = 488
Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 21 VTVLSIDGGGVRGIIPATILAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTAMLTA 79
+ +LSIDGGG+RGI+P LA+LE L+ G P+ARIADYFDV AG+ GG+ TAML
Sbjct: 98 ICILSIDGGGMRGILPGKALAYLEHALKSKSGDPNARIADYFDVAAGSGIGGIYTAMLFG 157
Query: 80 PNENNRPLFAADELAKFYIEHSPSIF 105
+ NRP+F AD+ +F ++ ++
Sbjct: 158 SRDGNRPIFKADDTWQFLTRNAKGLY 183
>AT2G39220.1 | chr2:16375055-16376663 REVERSE LENGTH=500
Length = 499
Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 21 VTVLSIDGGGVRGIIPATILAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTAMLTA 79
V VLSID GG+RGIIP LA+LE L+ G P+ARIADYFDV +G+ GG+ TAML A
Sbjct: 108 VCVLSIDSGGMRGIIPGKALAYLEHALKSKSGDPNARIADYFDVASGSGIGGIFTAMLFA 167
Query: 80 PNENNRPLFAADELAKFYIEHSPSIF 105
++ NRP+F A++ +F S +
Sbjct: 168 SSDGNRPIFKAEDTWRFLAMKGKSFY 193
>AT4G29800.2 | chr4:14590862-14592536 REVERSE LENGTH=527
Length = 526
Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 21 VTVLSIDGGGVRGIIPATILAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTAMLTA 79
+ VLSIDGGG+RG++ L +LE+ L++ G P+ARIADYFDV AG+ GG+ AM+ A
Sbjct: 121 ICVLSIDGGGMRGLLAGKSLIYLEQMLKEKSGDPNARIADYFDVAAGSGVGGVFAAMIFA 180
Query: 80 PNENNRPLFAADELAKFYIEHSPSIF 105
+ NRP+F A++ KF +E++ +
Sbjct: 181 TRDGNRPIFKAEDTWKFLVENAEGFY 206
>AT3G63200.1 | chr3:23346140-23347379 FORWARD LENGTH=385
Length = 384
Score = 75.5 bits (184), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 23 VLSIDGGGVRGIIPATILAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTAMLTAPN 81
+LSIDGGG GI+ A + LE +++ G P A I+D+FD+VAGT GG+L A+L A +
Sbjct: 32 ILSIDGGGTTGIVAAASILHLEHQIRLQTGDPHAHISDFFDIVAGTGIGGILAALLVADD 91
Query: 82 ENNRPLFAADELAKFYIEHSPSIF 105
+ RP+F A + KF E + +F
Sbjct: 92 GSGRPMFTARDAVKFVAEKNSELF 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,017,247
Number of extensions: 73744
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 10
Length of query: 108
Length of database: 11,106,569
Length adjustment: 77
Effective length of query: 31
Effective length of database: 8,995,537
Effective search space: 278861647
Effective search space used: 278861647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)