BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0474600 Os08g0474600|AK101574
(174 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10130.1 | chr4:6320959-6321483 REVERSE LENGTH=175 149 5e-37
AT1G74250.1 | chr1:27920328-27922414 FORWARD LENGTH=631 55 3e-08
AT2G33735.1 | chr2:14268532-14269394 REVERSE LENGTH=120 50 9e-07
AT3G57340.1 | chr3:21219175-21220278 FORWARD LENGTH=368 50 9e-07
AT3G62600.1 | chr3:23151038-23153346 REVERSE LENGTH=347 48 2e-06
AT3G13310.1 | chr3:4310827-4311300 REVERSE LENGTH=158 47 4e-06
AT1G59725.1 | chr1:21950738-21952210 FORWARD LENGTH=332 47 6e-06
AT5G16650.1 | chr5:5463446-5465075 REVERSE LENGTH=129 47 7e-06
>AT4G10130.1 | chr4:6320959-6321483 REVERSE LENGTH=175
Length = 174
Score = 149 bits (377), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 110/164 (67%), Gaps = 5/164 (3%)
Query: 9 TQKTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFSVQKAWE 68
+T+YE+LSV E A+Y+E+R YR+AIL++HPDK ++ SS + +F +QKAWE
Sbjct: 8 VHETYYEILSVKEDASYEEIRNSYRSAILHSHPDKLN---NTSRSSSDDEKFLKIQKAWE 64
Query: 69 VLRDPKSRTEYDKQLQTSRQNSANIAYEIEIEEMTVESTGDAMELMYPCRCGDHFSILSS 128
VL D + R YD L++SR + A EI IE+M+VE TGD ++L Y CRCGD+F + SS
Sbjct: 65 VLSDAELRVVYDNDLRSSRHDGIT-ADEISIEDMSVEITGDVIDLFYQCRCGDYFCVDSS 123
Query: 129 DLAEMGILVDDDGE-IYFQSSDCVSASVVLSCGSCSLKTRLVIN 171
+L MG + DG+ +Y + ASVVL CGSCSLKTR+ ++
Sbjct: 124 ELGTMGFALLRDGDFVYVKRLGAFVASVVLPCGSCSLKTRVWVD 167
>AT1G74250.1 | chr1:27920328-27922414 FORWARD LENGTH=631
Length = 630
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 4 SSNISTQKTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFSV 63
SS+ S ++ HYEVL +++ ++ DE+R+ YR L HPDK K L + +F +
Sbjct: 3 SSSRSEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDK-LMKAAGLSEAEATAQFQEL 61
Query: 64 QKAWEVLRDPKSRTEYD 80
A+EVL DPK R YD
Sbjct: 62 VHAYEVLSDPKERAWYD 78
>AT2G33735.1 | chr2:14268532-14269394 REVERSE LENGTH=120
Length = 119
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 11 KTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFSVQKAWEVL 70
K HY+VL +N A+ DE+R+ + L HPDK + + DS S F + +A++VL
Sbjct: 21 KDHYKVLELNCDASDDEIRSSFIRLALKWHPDKFKEE-DSATSR-----FQEINEAYQVL 74
Query: 71 RDPKSRTEYDKQLQTSRQNSANIAYEIEIEEMTVESTG 108
DP +R EYDK+ + R N E +E+ + G
Sbjct: 75 SDPIARQEYDKK-RMRRIYEHNTELLNEYKELILTCNG 111
>AT3G57340.1 | chr3:21219175-21220278 FORWARD LENGTH=368
Length = 367
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 7 ISTQKTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFSVQKA 66
I ++K +YE+L + + D+VR YR L HPDK+QA S E F SV KA
Sbjct: 108 IKSKKDYYEILGLESNCSVDDVRKAYRKLSLKVHPDKNQAP-----GSEE--AFKSVSKA 160
Query: 67 WEVLRDPKSRTEYD---------KQLQTSRQNSANIAYEIEIE 100
++ L + ++R +YD + +++R N N Y E E
Sbjct: 161 FQCLSNDEARKKYDVSGSDEPIYQPRRSARSNGFNGGYYYEDE 203
>AT3G62600.1 | chr3:23151038-23153346 REVERSE LENGTH=347
Length = 346
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 11 KTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFSVQKAWEVL 70
K++Y+VL V +GA+ ++++ YR L HPDK+Q ++ +F + A+EVL
Sbjct: 25 KSYYDVLQVPKGASDEQIKRAYRKLALKYHPDKNQGNEEATR------KFAEINNAYEVL 78
Query: 71 RDPKSRTEYDKQLQTS-RQNSAN 92
D + R Y+K + +Q SAN
Sbjct: 79 SDEEKREIYNKYGEEGLKQFSAN 101
>AT3G13310.1 | chr3:4310827-4311300 REVERSE LENGTH=158
Length = 157
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 14 YEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFSVQKAWEVLRDP 73
YE+L VNE A+ E++ YR+ HPD S++ + +F + KA+ L DP
Sbjct: 66 YELLKVNETASLTEIKTAYRSLAKVYHPDASES---------DGRDFMEIHKAYATLADP 116
Query: 74 KSRTEYDKQLQTSRQN 89
+R YD L+ R+
Sbjct: 117 TTRAIYDSTLRVPRRR 132
>AT1G59725.1 | chr1:21950738-21952210 FORWARD LENGTH=332
Length = 331
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 13 HYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFSVQKAWEVLRD 72
+Y VL+VN AT D+++ YR + HPDK+ + +F + +A++VL D
Sbjct: 5 YYNVLNVNPSATEDDLKKSYRRLAMKWHPDKNPTS----IKQEAEAKFKQISEAYDVLSD 60
Query: 73 PKSRTEYDK 81
P R YD+
Sbjct: 61 PNKRQIYDQ 69
>AT5G16650.1 | chr5:5463446-5465075 REVERSE LENGTH=129
Length = 128
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 8 STQKTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFSVQKAW 67
S K +Y++L V+ AT + +R YR L HPDK + DS + +F + +A+
Sbjct: 7 SPPKDYYKILEVDYDATEELIRLNYRKLALKWHPDKHKG--DSAATE----KFQEINEAY 60
Query: 68 EVLRDPKSRTEYD 80
VL DP R EYD
Sbjct: 61 NVLMDPAKRFEYD 73
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.127 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,485,722
Number of extensions: 124579
Number of successful extensions: 437
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 8
Length of query: 174
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 82
Effective length of database: 8,584,297
Effective search space: 703912354
Effective search space used: 703912354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 108 (46.2 bits)