BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0470700 Os08g0470700|J075067N02
(194 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08065.1 | chr1:2511788-2513341 REVERSE LENGTH=278 164 2e-41
AT1G08080.1 | chr1:2517022-2518546 REVERSE LENGTH=276 159 1e-39
AT4G20990.1 | chr4:11219772-11221126 FORWARD LENGTH=268 153 6e-38
AT2G28210.1 | chr2:12029997-12032338 FORWARD LENGTH=218 149 6e-37
AT4G21000.1 | chr4:11222529-11223756 FORWARD LENGTH=261 149 1e-36
AT5G56330.1 | chr5:22813768-22816162 FORWARD LENGTH=351 142 9e-35
AT5G04180.1 | chr5:1147907-1149237 REVERSE LENGTH=278 123 5e-29
AT3G52720.1 | chr3:19538804-19541116 REVERSE LENGTH=285 111 3e-25
>AT1G08065.1 | chr1:2511788-2513341 REVERSE LENGTH=278
Length = 277
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 102/148 (68%), Gaps = 4/148 (2%)
Query: 28 ETDDERKFGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHERLM--RNLGYLDYSY 85
E +DE +F Y E GP NW RL P WA C GNMQSPIDL+ +R++ NLGYL Y
Sbjct: 28 EVEDETQFNYEKKGEKGPENWGRLKPEWAMCGKGNMQSPIDLTDKRVLIDHNLGYLRSQY 87
Query: 86 LPAEASMVNRGHDIEVKFMG-NAGR-VVINGKAYKLKQLHWHTPSEHTVNGRRYDMELHL 143
LP+ A++ NRGHDI +KF G NAG + ING YKL+Q+HWH+PSEHT+NG+R+ +E H+
Sbjct: 88 LPSNATIKNRGHDIMMKFEGGNAGLGITINGTEYKLQQIHWHSPSEHTLNGKRFVLEEHM 147
Query: 144 VHDDGNSNTAVIGNLYQIGNPDPFLLMV 171
VH + AV+ Y++G PD FLL +
Sbjct: 148 VHQSKDGRNAVVAFFYKLGKPDYFLLTL 175
>AT1G08080.1 | chr1:2517022-2518546 REVERSE LENGTH=276
Length = 275
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Query: 28 ETDDERKFGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHER--LMRNLGYLDYSY 85
E +DER+F Y E GP W L P W C G MQSPIDL +ER ++ +LG L+ Y
Sbjct: 33 EVEDEREFNYKKNDEKGPERWGELKPEWEMCGKGEMQSPIDLMNERVNIVSHLGRLNRDY 92
Query: 86 LPAEASMVNRGHDIEVKFMGNAGRVVINGKAYKLKQLHWHTPSEHTVNGRRYDMELHLVH 145
P+ A++ NRGHDI +KF AG + ING Y+L+QLHWH+PSEHT+NGRR+ +ELH+VH
Sbjct: 93 NPSNATLKNRGHDIMLKFEDGAGTIKINGFEYELQQLHWHSPSEHTINGRRFALELHMVH 152
Query: 146 DDGNSNTAVIGNLYQIGNPDPFL 168
+ N AV+ LY+IG D F+
Sbjct: 153 EGRNRRMAVVTVLYKIGRADTFI 175
>AT4G20990.1 | chr4:11219772-11221126 FORWARD LENGTH=268
Length = 267
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 93/143 (65%), Gaps = 3/143 (2%)
Query: 28 ETDDERKFGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHER--LMRNLGYLDYSY 85
E DDE F Y TE GP W +++P W CNTG QSPIDL++ER L+ + + Y
Sbjct: 29 EVDDETPFTYEQKTEKGPEGWGKINPHWKVCNTGRYQSPIDLTNERVSLIHDQAWTR-QY 87
Query: 86 LPAEASMVNRGHDIEVKFMGNAGRVVINGKAYKLKQLHWHTPSEHTVNGRRYDMELHLVH 145
PA A + NRGHDI V + G+AG++ I + L Q HWH+PSEHTVNG RYD+ELH+VH
Sbjct: 88 KPAPAVITNRGHDIMVSWKGDAGKMTIRKTDFNLVQCHWHSPSEHTVNGTRYDLELHMVH 147
Query: 146 DDGNSNTAVIGNLYQIGNPDPFL 168
TAVIG LY++G P+ FL
Sbjct: 148 TSARGRTAVIGVLYKLGEPNEFL 170
>AT2G28210.1 | chr2:12029997-12032338 FORWARD LENGTH=218
Length = 217
Score = 149 bits (377), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 95/143 (66%), Gaps = 3/143 (2%)
Query: 29 TDDERKFGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHER--LMRNLGYLDYSYL 86
+DE +F Y ENGP W +L P W C G MQSPIDL ++R L+ +L L Y
Sbjct: 5 VEDEHEFSYEWNQENGPAKWGKLRPEWKMCGKGEMQSPIDLMNKRVRLVTHLKKLTRHYK 64
Query: 87 PAEASMVNRGHDIEVKF-MGNAGRVVINGKAYKLKQLHWHTPSEHTVNGRRYDMELHLVH 145
P A++ NRGHD+ +KF +G + +NG YKL QLHWH+PSEHT+NGRR+ +ELH+VH
Sbjct: 65 PCNATLKNRGHDMMLKFGEEGSGSITVNGTEYKLLQLHWHSPSEHTMNGRRFALELHMVH 124
Query: 146 DDGNSNTAVIGNLYQIGNPDPFL 168
++ N + AV+ LY+IG PD FL
Sbjct: 125 ENINGSLAVVTVLYKIGRPDSFL 147
>AT4G21000.1 | chr4:11222529-11223756 FORWARD LENGTH=261
Length = 260
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 94/143 (65%), Gaps = 1/143 (0%)
Query: 27 QETDDERKFGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHERL-MRNLGYLDYSY 85
+E ++ F Y TE GP W +LDP+W C+TG +QSPIDL+ ER+ + + L Y
Sbjct: 29 REIGNKPLFTYKQKTEKGPAEWGKLDPQWKVCSTGKIQSPIDLTDERVSLIHDQALSKHY 88
Query: 86 LPAEASMVNRGHDIEVKFMGNAGRVVINGKAYKLKQLHWHTPSEHTVNGRRYDMELHLVH 145
PA A + +RGHD+ V + G+ G++ I+ YKL Q HWH+PSEHT+NG YD+ELH+VH
Sbjct: 89 KPASAVIQSRGHDVMVSWKGDGGKITIHQTDYKLVQCHWHSPSEHTINGTSYDLELHMVH 148
Query: 146 DDGNSNTAVIGNLYQIGNPDPFL 168
+ T V+G LY++G PD FL
Sbjct: 149 TSASGKTTVVGVLYKLGEPDEFL 171
>AT5G56330.1 | chr5:22813768-22816162 FORWARD LENGTH=351
Length = 350
Score = 142 bits (359), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Query: 28 ETDDERKFGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHERLM--RNLGYLDYSY 85
E +DE +F Y GP W LD W C G MQSPIDL + ++ G L Y
Sbjct: 133 EVEDETEFSYETKGNKGPAKWGTLDAEWKMCGIGKMQSPIDLRDKNVVVSNKFGLLRSQY 192
Query: 86 LPAEASMVNRGHDIEVKFMG-NAGR-VVINGKAYKLKQLHWHTPSEHTVNGRRYDMELHL 143
LP+ ++ NRGHDI +KF G N G V I G Y+L+QLHWH+PSEHT+NG+R+ +E HL
Sbjct: 193 LPSNTTIKNRGHDIMLKFKGGNKGIGVTIRGTRYQLQQLHWHSPSEHTINGKRFALEEHL 252
Query: 144 VHDDGNSNTAVIGNLYQIGNPDPFLL 169
VH+ + AV+ LY +G DPFL
Sbjct: 253 VHESKDKRYAVVAFLYNLGASDPFLF 278
>AT5G04180.1 | chr5:1147907-1149237 REVERSE LENGTH=278
Length = 277
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 3/142 (2%)
Query: 30 DDERKFGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHE--RLMRN-LGYLDYSYL 86
+ E +F Y PG P WS + W C TG QSPI+L+ + R++ N L Y
Sbjct: 21 ETETEFHYKPGEIADPSKWSSIKAEWKICGTGKRQSPINLTPKIARIVHNSTEILQTYYK 80
Query: 87 PAEASMVNRGHDIEVKFMGNAGRVVINGKAYKLKQLHWHTPSEHTVNGRRYDMELHLVHD 146
P EA + NRG D++VK+ +AG++VIN YKL Q HWH PSEH ++G+R MELH+VH
Sbjct: 81 PVEAILKNRGFDMKVKWEDDAGKIVINDTDYKLVQSHWHAPSEHFLDGQRLAMELHMVHK 140
Query: 147 DGNSNTAVIGNLYQIGNPDPFL 168
+ AVIG L++ G P+ F+
Sbjct: 141 SVEGHLAVIGVLFREGEPNAFI 162
>AT3G52720.1 | chr3:19538804-19541116 REVERSE LENGTH=285
Length = 284
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 35 FGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHERLMRN--LGYLDYSYLPAEASM 92
FGY +NGP W L+P + C G +QSPID+ ++ N L + Y A++
Sbjct: 31 FGY--KGKNGPNQWGHLNPHFTTCAVGKLQSPIDIQRRQIFYNHKLNSIHREYYFTNATL 88
Query: 93 VNRGHDIEVKFMGNAGRVVINGKAYKLKQLHWHTPSEHTVNGRRYDMELHLVHDDGNSNT 152
VN ++ + F AG V+I K Y L Q+HWHTPSEH ++G +Y ELH+VH + +
Sbjct: 89 VNHVCNVAMFFGEGAGDVIIENKNYTLLQMHWHTPSEHHLHGVQYAAELHMVHQAKDGSF 148
Query: 153 AVIGNLYQIGNPDPFL 168
AV+ +L++IG +PFL
Sbjct: 149 AVVASLFKIGTEEPFL 164
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,347,253
Number of extensions: 187806
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 8
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)