BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0469500 Os08g0469500|AK109599
         (394 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10780.1  | chr1:3592875-3594310 REVERSE LENGTH=419            373   e-104

>AT1G10780.1 | chr1:3592875-3594310 REVERSE LENGTH=419
          Length = 418

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/421 (47%), Positives = 267/421 (63%), Gaps = 41/421 (9%)

Query: 12  MDALPDGVVQHILSQLSSARDVAACAGVSRGMRGCVPFLPALYFPRXXXXXXXXXXXXXX 71
           MD+LPD ++Q+ILS L+SARDVAAC  VS+  +     + ++ F R              
Sbjct: 1   MDSLPDAILQYILSYLTSARDVAACNCVSKRWKESTDSVKSVVFHRNSFESIMETDDSDS 60

Query: 72  XIGRMVEAAARLEELVIYCPFSAARLPRWLAARSASLRVLELRMDSAVSSGA---GSGHL 128
            + +M+ ++ RLEELV+Y PF+++ L  W+   S+SLR+LELRMD+  S      G   L
Sbjct: 61  IVRKMISSSRRLEELVVYSPFTSSGLASWMMHVSSSLRLLELRMDNLASEEVVVEGPLKL 120

Query: 129 DCIGAVANLEELRLWGLTMTRAPAWGQLERLRVLEIVGAAVRDVAVNGAVGACPNLTDL- 187
           DCIG   NLE L+LWG+ M   P W     LR LEIVGA + D +++ A+ ACPNL++L 
Sbjct: 121 DCIGVAKNLEILKLWGVLMMSPPKWDMFPNLRSLEIVGAKMDDSSLSHALRACPNLSNLL 180

Query: 188 ------------AAPLVE----------------------SLEIQGFCWISLQGGIRLKH 213
                         P +E                      SL++QG  WI +     LK+
Sbjct: 181 LLACEGVKSISIDLPYLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCSWIRVPETKFLKN 240

Query: 214 LTIAKNTGTGSVYNIEIGKLPELEKLSLRGVQWSWGAISSVLQCAREVKYLVMKIEFCGD 273
           L+I+  + TG VY ++   L  LE LS+RGVQW W AI  +LQ AR+VK+L MK+EF G+
Sbjct: 241 LSIS--SVTGRVYMVDFNNLSSLEALSIRGVQWCWDAICMILQQARDVKHLFMKVEFTGN 298

Query: 274 HDTLEPFPEVDLVDFFNSHPKLIKFEIHGAMFAAMCQKNSLKNLDSRFSIPCLEEVLITV 333
            + L+PFPE+D V+FFN+HPKL  F+IHGAMFAA+CQKNSLK L++ F+IPCLEEV+ITV
Sbjct: 299 -EALQPFPEIDFVEFFNNHPKLQTFDIHGAMFAALCQKNSLKKLETGFTIPCLEEVVITV 357

Query: 334 RSPLNAELKLNTLESLVKYSPRMRRMVVRISQMKNCHGSADGFFEEICKFMYMNNGRVRI 393
           RSPLNAE K+NTLESLVKY+  ++RMV+RI +MK+ H SAD F ++ICKF +MN   V I
Sbjct: 358 RSPLNAEQKMNTLESLVKYARGLKRMVIRILRMKSNHSSADDFCDDICKFRHMNEHLVHI 417

Query: 394 E 394
           E
Sbjct: 418 E 418



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,458,256
Number of extensions: 285082
Number of successful extensions: 958
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 113 (48.1 bits)