BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0463900 Os08g0463900|AK120178
         (187 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34860.1  | chr2:14708380-14709804 FORWARD LENGTH=187          179   9e-46

>AT2G34860.1 | chr2:14708380-14709804 FORWARD LENGTH=187
          Length = 186

 Score =  179 bits (453), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 85/129 (65%), Positives = 101/129 (78%)

Query: 59  EEKTTPSRRKCLACLCAVTLISASGPTMLTPNGLASDMMSKPAVCRNCNGSGAVLCDMCG 118
           ++K+   R+   AC+CA   + ++  T ++    A+        CRNC GSGAVLCDMCG
Sbjct: 58  DQKSVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMCG 117

Query: 119 GTGKWKALNRKRAKDVYLFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAKKLLDKM 178
           GTGKWKALNRKRAKDVY FTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP A++LL+KM
Sbjct: 118 GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPGARELLEKM 177

Query: 179 YNGKILPDS 187
           YNG++LPDS
Sbjct: 178 YNGRLLPDS 186



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,605,684
Number of extensions: 195496
Number of successful extensions: 537
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)