BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0463500 Os08g0463500|AK058457
(300 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41940.1 | chr2:17507556-17508329 FORWARD LENGTH=258 82 5e-16
AT3G58070.1 | chr3:21506845-21507606 REVERSE LENGTH=254 81 6e-16
AT5G06650.1 | chr5:2043486-2044061 FORWARD LENGTH=192 74 8e-14
AT1G68360.1 | chr1:25621678-25622412 REVERSE LENGTH=245 66 2e-11
AT1G67030.1 | chr1:25016644-25017237 FORWARD LENGTH=198 65 5e-11
AT1G24625.1 | chr1:8726009-8726638 REVERSE LENGTH=210 59 5e-09
AT5G25160.1 | chr5:8687524-8688231 FORWARD LENGTH=236 58 7e-09
AT1G80730.1 | chr1:30339493-30340179 REVERSE LENGTH=229 57 9e-09
AT5G10970.1 | chr5:3469268-3470086 FORWARD LENGTH=273 57 2e-08
AT1G66140.1 | chr1:24620063-24620845 REVERSE LENGTH=261 56 3e-08
AT5G14010.1 | chr5:4522260-4522745 FORWARD LENGTH=162 53 2e-07
AT5G27880.1 | chr5:9885908-9886744 FORWARD LENGTH=279 51 6e-07
AT5G57520.1 | chr5:23296019-23296471 FORWARD LENGTH=151 51 8e-07
AT5G01860.1 | chr5:335630-336277 FORWARD LENGTH=216 50 1e-06
>AT2G41940.1 | chr2:17507556-17508329 FORWARD LENGTH=258
Length = 257
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 65/132 (49%), Gaps = 21/132 (15%)
Query: 12 NIDSFSQLPFIRQAA-REKXXXXXXXXXXXXXXXXIRLFGFDVPPDASTTADVLGENKES 70
N++SFSQLPFIR+ +EK IRLFG ++ D S ++ E +
Sbjct: 17 NVESFSQLPFIRRTPPKEKAAI-------------IRLFGQELVGDNSD--NLSAEPSDH 61
Query: 71 XXXXXXXEGSKQTASGLDAIXXXXXS-----RKFECHYCCRNFPTSQALGGHQNAHKRER 125
E S+ R+FECHYC RNFPTSQALGGHQNAHKRER
Sbjct: 62 QTTTKNDESSENIKDKDKEKDKDKDKDNNNNRRFECHYCFRNFPTSQALGGHQNAHKRER 121
Query: 126 QRAKHAQFQTAM 137
Q AK + +
Sbjct: 122 QHAKRGSMTSYL 133
>AT3G58070.1 | chr3:21506845-21507606 REVERSE LENGTH=254
Length = 253
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 4 ERDGRDQPNIDSFSQLPFIRQAAREKXXXXXXXXXXXXXXXXIRLFGFDVPP-DAS-TTA 61
E + +D N++SFSQLPFIR+ + IR+FG D D S TT
Sbjct: 7 ETETQDFMNVESFSQLPFIRRPKDKNPKP-------------IRVFGKDFTGRDFSITTG 53
Query: 62 DVLGENKESXXXXXXXEGSKQTASGLDAIXXXXXSRKFECHYCCRNFPTSQALGGHQNAH 121
+ E QT +R+FECHYC RNFPTSQALGGHQNAH
Sbjct: 54 QEDYTDPYQTKNKEEEEEEDQTGDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAH 113
Query: 122 KRERQRAK 129
KRERQ AK
Sbjct: 114 KRERQLAK 121
>AT5G06650.1 | chr5:2043486-2044061 FORWARD LENGTH=192
Length = 191
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 46 IRLFGFDV--PPDASTTADVLGENKESXXXXXXXEGSKQTASGLDAIXXXXXSRKFECHY 103
IRLFGF+ + S + D EN ES I ++F+CHY
Sbjct: 19 IRLFGFEFGASHEESESKDNYNENNES-------------------IKDDNKEKRFKCHY 59
Query: 104 CCRNFPTSQALGGHQNAHKRERQRAKHAQFQTAMA 138
C RNFPTSQALGGHQNAHKRERQ+ K + A
Sbjct: 60 CFRNFPTSQALGGHQNAHKRERQQTKRFNLHSNAA 94
>AT1G68360.1 | chr1:25621678-25622412 REVERSE LENGTH=245
Length = 244
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 31/38 (81%)
Query: 97 RKFECHYCCRNFPTSQALGGHQNAHKRERQRAKHAQFQ 134
RK+EC YCCR F SQALGGHQNAHK+ERQ+ K AQ Q
Sbjct: 71 RKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQ 108
>AT1G67030.1 | chr1:25016644-25017237 FORWARD LENGTH=198
Length = 197
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 96 SRKFECHYCCRNFPTSQALGGHQNAHKRERQRAKHAQF 133
SRK+EC YCCR F SQALGGHQNAHK+ERQ K AQ
Sbjct: 38 SRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQM 75
>AT1G24625.1 | chr1:8726009-8726638 REVERSE LENGTH=210
Length = 209
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 97 RKFECHYCCRNFPTSQALGGHQNAHKRERQRAKHAQFQTAMAMHH 141
R F C+YC R F +SQALGGHQNAHKRER AK A M HH
Sbjct: 57 RVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHH 101
>AT5G25160.1 | chr5:8687524-8688231 FORWARD LENGTH=236
Length = 235
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%)
Query: 83 TASGLDAIXXXXXSRKFECHYCCRNFPTSQALGGHQNAHKRERQRAKHAQFQTAMAMHHG 142
T S ++ + F C+YC R F +SQALGGHQNAHKRER AK Q A A G
Sbjct: 45 TTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFG 104
Query: 143 H 143
H
Sbjct: 105 H 105
>AT1G80730.1 | chr1:30339493-30340179 REVERSE LENGTH=229
Length = 228
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 97 RKFECHYCCRNFPTSQALGGHQNAHKRERQRAKHAQF 133
R F C+YC R F +SQALGGHQNAHKRER AK Q+
Sbjct: 66 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQY 102
>AT5G10970.1 | chr5:3469268-3470086 FORWARD LENGTH=273
Length = 272
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 97 RKFECHYCCRNFPTSQALGGHQNAHKRERQRAKHAQ-FQTAMAMHHGHG 144
+ F C+YC R F +SQALGGHQNAHKRER AK Q +A A H +G
Sbjct: 102 KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMASAAAFGHPYG 150
>AT1G66140.1 | chr1:24620063-24620845 REVERSE LENGTH=261
Length = 260
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 30/48 (62%)
Query: 97 RKFECHYCCRNFPTSQALGGHQNAHKRERQRAKHAQFQTAMAMHHGHG 144
R F C+YC R F +SQALGGHQNAHKRER AK A + G G
Sbjct: 83 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRG 130
>AT5G14010.1 | chr5:4522260-4522745 FORWARD LENGTH=162
Length = 161
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 25/33 (75%)
Query: 97 RKFECHYCCRNFPTSQALGGHQNAHKRERQRAK 129
R F C YC R F TSQALGGHQNAHKRER A+
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAAR 68
>AT5G27880.1 | chr5:9885908-9886744 FORWARD LENGTH=279
Length = 278
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 96 SRKFECHYCCRNFPTSQALGGHQNAHKRERQRAK 129
++ + CH+C + F TSQALGGHQNAHK+ER+ K
Sbjct: 77 NKIYTCHFCKKGFSTSQALGGHQNAHKQEREWDK 110
>AT5G57520.1 | chr5:23296019-23296471 FORWARD LENGTH=151
Length = 150
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 97 RKFECHYCCRNFPTSQALGGHQNAHKRERQRAKHAQ 132
R F C+YC R F +SQALGGHQNAHK ER AK ++
Sbjct: 50 RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSR 85
>AT5G01860.1 | chr5:335630-336277 FORWARD LENGTH=216
Length = 215
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 96 SRKFECHYCCRNFPTSQALGGHQNAHKRERQRAK 129
+R F C +C + F TSQALGGHQNAHK+ER AK
Sbjct: 64 ARVFACTFCKKEFSTSQALGGHQNAHKQERSLAK 97
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,824,129
Number of extensions: 89587
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 18
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)