BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0462900 Os08g0462900|J100084I23
(308 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G49470.1 | chr1:18310554-18311462 FORWARD LENGTH=303 209 2e-54
AT1G55230.1 | chr1:20602895-20603797 FORWARD LENGTH=301 139 2e-33
AT1G55240.1 | chr1:20605015-20606185 FORWARD LENGTH=312 135 3e-32
AT5G19870.1 | chr5:6716182-6717012 REVERSE LENGTH=277 124 8e-29
AT1G32120.1 | chr1:11552926-11558608 FORWARD LENGTH=1207 86 2e-17
>AT1G49470.1 | chr1:18310554-18311462 FORWARD LENGTH=303
Length = 302
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 156/292 (53%), Gaps = 27/292 (9%)
Query: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGXXXXXXXXX 60
MGTFLGHFVPGL+ A+LGLWH NT+R+Y LKG F A WFPFP
Sbjct: 1 MGTFLGHFVPGLSLALLGLWHLFNTIRSYCLKGPEAFSAKFWFPFPK----LKHLELILI 56
Query: 61 XXXXXXAIVDQLVDFPLLSFT-IQPDALEHATMYLHLAVYXXXXXXXXXXXXXXXXXXXX 119
+I +DFP +F+ ++PD LEHA+M+LHL ++
Sbjct: 57 LFFSFLSITLLTLDFPNFNFSSLKPDNLEHASMFLHLIIFACFALFCELTLCSDL----- 111
Query: 120 XXXLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVSTSATVVLPX 179
++ L+ASVF QELFLL FHS DH+GLEGHYH+LLQL+ S S A+ P
Sbjct: 112 ---FSGLIGVLSASVFAQELFLLHFHSTDHSGLEGHYHFLLQLIAFVSFSSALASASFPK 168
Query: 180 XXXXXXXXXXXXLFQGLWFIVMGFALWVPALVPRGC--HGAEAGGGAMRS-----AVACP 232
+FQG WF+ MGF LW+P VPRGC + + + RS AVAC
Sbjct: 169 SFSAALFLPISVMFQGCWFLNMGFMLWIPEYVPRGCVSNMSTSTDNNRRSVYHSGAVACE 228
Query: 233 TDEAARRAVVMANLQFSWVLAGVWAVTAYLCLRVGGS-------RSMEYRQI 277
+ A RA +ANLQFSW+L+ + +T LCL+ G S+EY ++
Sbjct: 229 SPGAEIRAKALANLQFSWMLSAILIITCALCLKYSGKVVLPKIRSSLEYERL 280
>AT1G55230.1 | chr1:20602895-20603797 FORWARD LENGTH=301
Length = 300
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 120/277 (43%), Gaps = 24/277 (8%)
Query: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGXXXXXXXXX 60
MGT +GH PG AF LGLWH N ++ + L + F ++ WFP
Sbjct: 1 MGTLVGHVAPGFAFFALGLWHLFNNIKLFCL-NPNTFTSSPWFP----TSKLRHLELYII 55
Query: 61 XXXXXXAIVDQLVDFPLLSFTIQPDA---------LEHATMYLHLAVYXXXXXXXXXXXX 111
+I +L P D EH+++ + VY
Sbjct: 56 MVCSSISIASELFIGPKKHQPFDSDGTIPSNHLHNFEHSSISMSFLVYAIFAVVLDQERR 115
Query: 112 XXXXXXXXXXXLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVST 171
+ +A+S F Q+LFL HSADH G+EG YH LLQL++ S ++T
Sbjct: 116 RSNISHG-------LTMLVASSAFAQQLFLFHLHSADHMGIEGQYHKLLQLIIFVSFLTT 168
Query: 172 SATVVLPXXXXXXXXXXXXXLFQGLWFIVMGFALWVPALVPRGCHGAEAGGGAMRSAVAC 231
+ LP FQG+WF+VMG+ LW P+L+P+GC E G + C
Sbjct: 169 LIGITLPKSFLVSFVRSSSITFQGVWFVVMGYMLWTPSLIPKGCFLHEEEG---HQVIKC 225
Query: 232 PTDEAARRAVVMANLQFSWVLAGVWAVTAYLCLRVGG 268
+D+A RA + N++FSW G+ L L + G
Sbjct: 226 SSDKAIHRAKSLVNIEFSWFFVGITIFVMSLFLILSG 262
>AT1G55240.1 | chr1:20605015-20606185 FORWARD LENGTH=312
Length = 311
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 136/313 (43%), Gaps = 26/313 (8%)
Query: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGXXXXXXXXX 60
MG+FLGH +PG AF LGLWH N ++ + L + F ++ WFP +
Sbjct: 1 MGSFLGHVLPGFAFVALGLWHLFNNIKLFCLH-PNTFSSSTWFP----ISKLRHLELYLI 55
Query: 61 XXXXXXAIVDQLVDFPLLSFTIQPDA---------LEHATMYLHLAVYXXXXXXXXXXXX 111
+I +L P D EH+++ + VY
Sbjct: 56 MLSSTASISMELFIGPRRHHPFDVDGTIPSNHLHNFEHSSISMSFLVYAVLALVLDRARP 115
Query: 112 XXXXXXXXXXXLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVST 171
G + A AA+ F Q+L L FHS DH G+EG YH +LQ+V+ SL++T
Sbjct: 116 RAAASE------GLTMLA-AAAAFSQQLLLFHFHSTDHMGVEGQYHVILQVVIFVSLLTT 168
Query: 172 SATVVLPXXXXXXXXXXXXXLFQGLWFIVMGFALWVPALVPRGCHGAEAGGGAMRSAVAC 231
+ LP FQG+W IV+G L+ P+L+P+GC+ + G + V C
Sbjct: 169 IMGIFLPKSFLVSLVRSSSIAFQGVWLIVIGCMLYTPSLIPKGCYIHDEGRHII---VKC 225
Query: 232 PTDEAARRAVVMANLQFSW--VLAGVWAVTAYLCLRVGGSRSMEYRQIQAPSXXXXXXXX 289
T+EA RA + NL+FSW V ++ VT YL L ++EY + +
Sbjct: 226 STEEALHRAKSLVNLEFSWLFVTNTLFVVTLYLILDRVYGENVEYSSLTTNNQTYQDDEE 285
Query: 290 XXXXXTQSQKRVF 302
+QK F
Sbjct: 286 QHFESKSTQKTSF 298
>AT5G19870.1 | chr5:6716182-6717012 REVERSE LENGTH=277
Length = 276
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 125/284 (44%), Gaps = 15/284 (5%)
Query: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGXXXXXXXXX 60
MGT +GH +PG F LGLWH N ++ + L S + A W FP P
Sbjct: 1 MGTLVGHILPGFFFFALGLWHLFNHIKIFSLHPKS-YIAPLW--FPLSKPRYLEPLVIII 57
Query: 61 XXXXXXAIVDQLVDFPLLSFTIQPDAL--EHATMYLHLAVYXXXXXXXXXXXXXXXXXXX 118
++ L F + H + H +
Sbjct: 58 ASSLSISVELFLGQKNHQPFDPNDGTIPSNHLHNFEHSCISFTFITYAAFAIVFDKTRPI 117
Query: 119 XXXXLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVSTSATVVLP 178
L ++AALA F Q+LFL FHS+DH G+EGHYH LLQLVV SLV+T + LP
Sbjct: 118 AHRSLINLIAALA---FAQQLFLFHFHSSDHTGVEGHYHLLLQLVVFVSLVTTLLGIALP 174
Query: 179 XXXXXXXXXXXXXLFQGLWFIVMGFALWVPALVPRGCH-GAEAGGGAMRSAVACPTDEAA 237
FQG+W + M LW P+LVP+ C E G +R C +A
Sbjct: 175 SSFILSFVRSLSVSFQGIWLMSMACMLWTPSLVPKDCFLHIEEGKHTIR----CSDVKAL 230
Query: 238 RRAVVMANLQFSW--VLAGVWAVTAYLCLRVGGSRSMEYRQIQA 279
RA+ + N+QFSW V+ ++A+ Y+ L+ +EY Q++
Sbjct: 231 HRAISLVNIQFSWFLVIITIFAMWFYIFLQRIYGEKIEYSQLRT 274
>AT1G32120.1 | chr1:11552926-11558608 FORWARD LENGTH=1207
Length = 1206
Score = 85.9 bits (211), Expect = 2e-17, Method: Composition-based stats.
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 32/259 (12%)
Query: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGXX-XXXXXX 59
MG+F GH +PG F ++G+WH ++V Y + S FR W PVPG
Sbjct: 943 MGSFKGHALPGTLFLVVGVWHIWSSVVRY-ISNPSSFRVRVW----HPVPGFNDRIKYLE 997
Query: 60 XXXXXXXAIVDQLVDFP-------LLSFTIQPDAL---EHATMYLHLAVYXXXXXXXXXX 109
+ +D ++F ++ + P + EH+ M L +
Sbjct: 998 LYVVTIGSFIDLCIEFLYSTHLKFFVNGVLNPSHMNDFEHSGMLLMFFILGFIALLSEKT 1057
Query: 110 XXXXXXXXXXXXXLGEVVAALAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLV 169
E + +AA+ F E L FHS H GLEG+YH LL ++ ++
Sbjct: 1058 RLLPLPQ--------EALCLIAATAFTAECLLFFFHSTSHKGLEGYYHLLLVFLIGLCVI 1109
Query: 170 STSATVVLPXXXXXXXXXXXXXLFQGLWFIVMGFALWVPALVPRGCHGAEAGGGAMRSAV 229
S+ A + P QGLWF F L+ P ++P+GC +++V
Sbjct: 1110 SSIAGAICPTSFPVDLCNGIAMTLQGLWFYQTAFTLYGP-MMPQGC-------SLKQNSV 1161
Query: 230 ACPTDEAARRAVVMANLQF 248
C + ++ +AN Q
Sbjct: 1162 VCRSVDSEVSGEFLANFQL 1180
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,821,043
Number of extensions: 138949
Number of successful extensions: 301
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 8
Length of query: 308
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 210
Effective length of database: 8,419,801
Effective search space: 1768158210
Effective search space used: 1768158210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)