BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0460900 Os08g0460900|Os08g0460900
         (584 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13570.1  | chr1:4642528-4643930 REVERSE LENGTH=417             91   1e-18
AT5G22670.1  | chr5:7538192-7539685 REVERSE LENGTH=444             52   8e-07

>AT1G13570.1 | chr1:4642528-4643930 REVERSE LENGTH=417
          Length = 416

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 187/427 (43%), Gaps = 51/427 (11%)

Query: 2   DALGSLPLDVLDNILSRLHIHDVVRTSALSRAWRRRWESLPTVGLLNSPGIGASD----- 56
           D +  LP  +++NIL+RL I D +RTS LS  WR +W +L T  + +   +  S+     
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTL-TDLVFDEKCVSPSNDRCVV 64

Query: 57  -------VDALLLRRTAPVRSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXTLRYEF 109
                  +  +LL    P+  F+L+T  +   P     W                   EF
Sbjct: 65  ETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPD-IDQWLLFLSRNGIKELVLKLGEGEF 123

Query: 110 MYQKLNSCLFSFRELTSLKLYCCGLPNLPAEFAGFPNLKTLHFSMVQAQSPGGRGIATLI 169
              ++ +CLF+  +LT L+L  C   + P  F GF  LK+L+   +         I +LI
Sbjct: 124 ---RVPACLFNCLKLTCLELCHCEF-DPPQYFKGFSYLKSLNLHQILV---APEVIESLI 176

Query: 170 AASPVLQEASL--IDGKLIG-----------DGPDEDWVIRGS-NLRKLTIALGHKYGGR 215
           +  P+L+  SL   D  ++            DG  +D  +  +  L  +++++       
Sbjct: 177 SGCPLLEFLSLSYFDSLVLSISAPNLMYLYLDGEFKDIFLENTPKLVAISVSMYMH---- 232

Query: 216 IEDIARLEECCLFGPNYAKYLMRMAHVTKL--SFYCNSILSTEVDVLERLPFLFENLRSL 273
            ED+   E+   +  N  K+L  +  + KL    Y    LS   D   RLP  + +L+++
Sbjct: 233 -EDVTDFEQSSDY--NLVKFLGGVPLLEKLVGYIYFTKYLSIGDDP-GRLPLTYIHLKTI 288

Query: 274 VL-GVNFCILSHILATFCLLRSAPVLEELDVWVFSDGTQEMKTDDEFFDA---QWVNHMF 329
            L  V F     +L    L+  +P L+EL V   +   Q    ++E FD     + ++  
Sbjct: 289 ELYQVCFEDADEVLVLLRLVTHSPNLKELKVS--ASPVQPFPLEEEGFDLFERDYFDYKL 346

Query: 330 AKLHVVRMKKVSCLCNEMLLIEFILSKARALRVLSLTLASNSQFSIEEAITDITEYPRAS 389
             L  V++   S +  E+  I F+L  +  L  ++++ + + + +  + + ++  YPR S
Sbjct: 347 PSLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIELLRYPRVS 406

Query: 390 PYAQVIF 396
           P AQ++F
Sbjct: 407 PRAQLLF 413



>AT5G22670.1 | chr5:7538192-7539685 REVERSE LENGTH=444
          Length = 443

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 17/224 (7%)

Query: 2   DALGSLPLDVLDNILSRLHIHDVVRTSALSRAWRRRWESLPTVGLLNSPGIG----ASDV 57
           D++  LP D+L  ILS L     VRTS LS+ W+R   S+P +    S   G    A  V
Sbjct: 11  DSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFNVSEFHGYYEFARVV 70

Query: 58  DALL-LRRTAPVRSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXTLRYEFMYQKL-N 115
              L   R   +   +LA   +    +    W                 R+ ++ Q+L  
Sbjct: 71  HGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVKRKVQHLDIG--RWSYLGQELIP 128

Query: 116 SCLFSFRELTSLKLYCCGLPNLPAEFAGFPNLKTLHFSMVQAQSPGGRGIATLIAASPVL 175
             L++   L SL+L+   LP+   +    P LKT+H  ++    P    +  LI++ PVL
Sbjct: 129 HSLYTCETLVSLRLHNVSLPDF--DHVSLPRLKTMH--LIDNIYPNDALLENLISSCPVL 184

Query: 176 QEASLIDGKLIGDGPDEDWVIRGSNLRKLTIAL-GHKYGGRIED 218
           ++ ++       +   +   +R  +L+ L +AL G +YG  IED
Sbjct: 185 EDLNVSRD---VENIVKVLRVRSLSLKSLILALDGDRYGD-IED 224



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,099,833
Number of extensions: 492547
Number of successful extensions: 1541
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1543
Number of HSP's successfully gapped: 3
Length of query: 584
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 480
Effective length of database: 8,255,305
Effective search space: 3962546400
Effective search space used: 3962546400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)