BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0453200 Os08g0453200|AK067942
         (107 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56220.3  | chr1:21043414-21044469 FORWARD LENGTH=141           52   6e-08
AT1G54070.1  | chr1:20182683-20183242 FORWARD LENGTH=124           47   2e-06

>AT1G56220.3 | chr1:21043414-21044469 FORWARD LENGTH=141
          Length = 140

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 26/28 (92%)

Query: 1  MGLLDQLWDETVAGPRPDSGLGKLRNYY 28
          MGLLD LWD+TVAGPRP++GLGKLR ++
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHH 28



>AT1G54070.1 | chr1:20182683-20183242 FORWARD LENGTH=124
          Length = 123

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 23/27 (85%)

Query: 1  MGLLDQLWDETVAGPRPDSGLGKLRNY 27
          MG L +LWDETVAGP PD+GLGKLR +
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKH 27



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,878,355
Number of extensions: 55961
Number of successful extensions: 58
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 105 (45.1 bits)